Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 Y_RNA.60-201ENST00000362831 98 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 Y_RNA.66-201ENST00000362862 102 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 RNU6-888P-201ENST00000363010 101 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 AC090844.1-201ENST00000422019 156 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 AL121914.1-201ENST00000450188 156 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 PDCD5P2-201ENST00000507570 312 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 RNU2-13P-201ENST00000515909 113 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 AC036111.3-201ENST00000526389 112 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 MIR6767-201ENST00000637302 66 ntBASIC0.84□□□□□ -2.27
NKX6-3A6NJ46 SNORD115-34-201ENST00000362441 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.23-201ENST00000362496 106 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-12-201ENST00000362583 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-29-201ENST00000362834 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-9-201ENST00000362912 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-21-201ENST00000362963 81 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-14-201ENST00000363090 81 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-13-201ENST00000363358 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-41-201ENST00000363608 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-11-201ENST00000363616 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-5-201ENST00000363633 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-39-201ENST00000363694 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-4-201ENST00000363810 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-16-201ENST00000363887 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-6-201ENST00000363942 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.191-201ENST00000363972 113 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-42-201ENST00000364273 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 RNU4-38P-201ENST00000364472 129 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-15-201ENST00000364809 81 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-1-201ENST00000364961 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 RNU6-702P-201ENST00000364982 107 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.307-201ENST00000365022 117 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-26-201ENST00000365067 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-10-201ENST00000365073 81 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 RNU6-396P-201ENST00000365369 105 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-43-201ENST00000365503 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-36-201ENST00000365629 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORA1-201ENST00000384107 130 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 RNY3P5-201ENST00000384127 102 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORA27-201ENST00000384323 126 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD89-201ENST00000390981 114 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORA26-201ENST00000391286 122 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 AC087499.4-201ENST00000448505 178 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 MIR2115-201ENST00000516657 100 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 SNORD115-40-201ENST00000606510 82 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 AC023934.1-201ENST00000574529 2389 ntBASIC0.83□□□□□ -2.28
NKX6-3A6NJ46 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 RNY4P28-201ENST00000365281 93 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 RNU6-728P-201ENST00000365375 104 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 SNORD114-22-201ENST00000365423 72 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 RNU6-125P-201ENST00000384505 107 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 MIR200A-201ENST00000384875 90 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 SNORA79-201ENST00000408376 140 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 RNU2-55P-201ENST00000411146 174 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 HMGN1P33-201ENST00000432945 451 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 ACA64.5-201ENST00000516207 127 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 RNU6-126P-201ENST00000516685 103 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 MIR3129-201ENST00000581095 76 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 MIR4661-201ENST00000582720 75 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 MIR4452-201ENST00000583004 71 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 MIR3149-201ENST00000584629 83 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 AP000942.4-201ENST00000604811 241 ntBASIC0.82□□□□□ -2.28
NKX6-3A6NJ46 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 SNORD114-27-201ENST00000363766 70 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.193-201ENST00000363979 102 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 SNORD113.3-201ENST00000364630 78 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 SNORA20.1-201ENST00000364790 130 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 RNU6-1335P-201ENST00000365426 107 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.447-201ENST00000384184 113 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 RNU6-913P-201ENST00000390913 95 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 SNORA40.5-201ENST00000391061 128 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.626-201ENST00000411288 95 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 RPS3AP1-201ENST00000413190 320 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 POLR2J4-204ENST00000418424 324 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 RNA5SP153-201ENST00000516498 76 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 RNU11-2P-201ENST00000516898 142 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 RNU6-111P-201ENST00000517179 105 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 MIR4744-201ENST00000581563 82 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 AC106800.4-201ENST00000614905 153 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 7SK.10-201ENST00000621414 298 ntBASIC0.81□□□□□ -2.28
NKX6-3A6NJ46 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.20-201ENST00000362479 113 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 RNU6-1189P-201ENST00000383958 107 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 AC015818.7-201ENST00000428754 109 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 AC087499.7-201ENST00000441958 109 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 snoU13.16-201ENST00000459350 104 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 snoU13.21-201ENST00000459368 105 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 RPS29P24-201ENST00000486345 171 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.797-201ENST00000515977 94 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 RNU6-197P-201ENST00000516680 100 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 AL020996.3-201ENST00000606617 222 ntBASIC0.8□□□□□ -2.28
NKX6-3A6NJ46 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.116-201ENST00000363292 103 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.144-201ENST00000363521 113 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 RNU6-103P-201ENST00000363686 107 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 Y_RNA.182-201ENST00000363880 111 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 MIR605-201ENST00000385078 83 ntBASIC0.79□□□□□ -2.28
NKX6-3A6NJ46 SNORD77.3-201ENST00000391113 65 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms