Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 MIR5000-201ENST00000577717 103 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 MIR3144-201ENST00000579460 79 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 MIR4295-201ENST00000585286 85 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 PVT1_3.1-201ENST00000620853 95 ntBASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
SMCHD1A6NHR9 SNORA27-201ENST00000384323 126 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 RNA5SP236-201ENST00000516169 116 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 RNU6-1116P-201ENST00000517269 99 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 AC131055.1-201ENST00000584626 316 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 ICE2P2-201ENST00000483823 2787 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 RNU6-312P-201ENST00000364629 107 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.343-201ENST00000365354 112 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 RNA5SP259-201ENST00000365541 109 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.410-201ENST00000383992 113 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 RNU6-1067P-201ENST00000384752 107 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 MIR548M-201ENST00000408260 86 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 RNU6-504P-201ENST00000516568 104 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 AC008133.2-201ENST00000624540 351 ntBASIC1.25□□□□□ -2.21
SMCHD1A6NHR9 MIR367-201ENST00000362299 68 ntBASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 snoU13.25-201ENST00000458945 104 ntBASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 SNORA31.4-201ENST00000516049 129 ntBASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 RNU6-1219P-201ENST00000516143 112 ntBASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 SNORA77B-201ENST00000578179 125 ntBASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 AL365265.1-201ENST00000621045 234 ntBASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.270-201ENST00000364693 104 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 RNU6-1189P-201ENST00000383958 107 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.486-201ENST00000384398 107 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 RNU6-239P-201ENST00000390990 99 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 RNU1-78P-201ENST00000391248 165 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 MIR513C-201ENST00000401352 84 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 RNU7-73P-201ENST00000458743 63 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 SNORA81.3-201ENST00000517283 198 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 AC098479.1-201ENST00000609225 154 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 MIR8065-201ENST00000620577 100 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.150-201ENST00000363562 102 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 MIR520E-201ENST00000384867 87 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 RNU2-70P-201ENST00000410718 179 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 SNORA74.3-201ENST00000517108 154 ntBASIC1.23□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.37-201ENST00000362606 108 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 RNU6-268P-201ENST00000364174 107 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.515-201ENST00000384535 112 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 MIR598-201ENST00000384868 97 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 snoU13.16-201ENST00000459350 104 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 RPS29P24-201ENST00000486345 171 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 RNU6-1212P-201ENST00000517023 104 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 CYP3A137P-201ENST00000562436 69 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 SNORD114-21-201ENST00000606412 72 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 MIR4791-201ENST00000607666 84 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.182-201ENST00000363880 111 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.205-201ENST00000364128 113 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 Y_RNA.584-201ENST00000391090 114 ntBASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.22□□□□□ -2.21
SMCHD1A6NHR9 SNORD115-34-201ENST00000362441 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-12-201ENST00000362583 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 Y_RNA.36-201ENST00000362602 112 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-29-201ENST00000362834 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-9-201ENST00000362912 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-21-201ENST00000362963 81 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-14-201ENST00000363090 81 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-13-201ENST00000363358 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-41-201ENST00000363608 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-11-201ENST00000363616 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-5-201ENST00000363633 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-39-201ENST00000363694 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-4-201ENST00000363810 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-16-201ENST00000363887 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-6-201ENST00000363942 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD14E-201ENST00000364009 85 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-42-201ENST00000364273 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 U8.5-201ENST00000364528 136 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-15-201ENST00000364809 81 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-1-201ENST00000364961 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 Y_RNA.299-201ENST00000364973 94 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-26-201ENST00000365067 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-10-201ENST00000365073 81 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 Y_RNA.351-201ENST00000365436 96 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-43-201ENST00000365503 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-36-201ENST00000365629 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 Y_RNA.398-201ENST00000383952 99 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 Y_RNA.506-201ENST00000384494 102 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 RPS3AP1-201ENST00000413190 320 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 RPL30P7-201ENST00000479312 323 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 MIR3121-201ENST00000579680 77 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 MIR4285-201ENST00000581001 85 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 SNORD115-40-201ENST00000606510 82 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 AC011603.4-201ENST00000611325 277 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 MIR6079-201ENST00000635807 62 ntBASIC1.21□□□□□ -2.22
SMCHD1A6NHR9 RNU6-151P-201ENST00000364158 107 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms