Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU6-1292P-201ENST00000383856 107 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 RNY1P5-201ENST00000383890 115 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 SNORA1-201ENST00000384107 130 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 MIR136-201ENST00000385207 82 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 MIR802-201ENST00000390235 94 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
VPS4AQ9UN37 RNU7-200P-201ENST00000516105 62 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 RNU6-693P-201ENST00000516134 107 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 AC104465.1-201ENST00000611365 139 ntBASIC1.64□□□□□ -2.15
VPS4AQ9UN37 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS4AQ9UN37 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS4AQ9UN37 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS4AQ9UN37 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
VPS4AQ9UN37 SNORD115-28-201ENST00000363931 81 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 SNORD1A-201ENST00000364968 72 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.327-201ENST00000365201 102 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.398-201ENST00000383952 99 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 RNU6-938P-201ENST00000411285 103 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 AC009474.2-201ENST00000451383 136 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 MTND5P41-201ENST00000517498 206 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 AC090049.2-201ENST00000550377 109 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 MIR4303-201ENST00000581299 66 ntBASIC1.63□□□□□ -2.15
VPS4AQ9UN37 ICE2P2-201ENST00000483823 2787 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.506-201ENST00000384494 102 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 MIR624-201ENST00000385217 97 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 SNORD77.3-201ENST00000391113 65 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 AF228730.3-201ENST00000436691 102 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 AC087499.4-201ENST00000448505 178 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 snoU13.9-201ENST00000458927 103 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 MIR4285-201ENST00000581001 85 ntBASIC1.62□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.37-201ENST00000362606 108 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 RNU6-449P-201ENST00000383914 107 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.410-201ENST00000383992 113 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 MIR516B2-201ENST00000385190 85 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS4AQ9UN37 AC092991.1-201ENST00000477176 376 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 RNU6-1270P-201ENST00000517128 108 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 SNORD53B-201ENST00000577887 78 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 AL513534.2-201ENST00000603836 250 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 AC134878.1-201ENST00000619901 243 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 MIR3658-201ENST00000636291 56 ntBASIC1.61□□□□□ -2.15
VPS4AQ9UN37 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
VPS4AQ9UN37 SNORA25.7-201ENST00000364375 127 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNU6-1082P-201ENST00000364574 107 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNU6-818P-201ENST00000364837 108 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNA5SP259-201ENST00000365541 109 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNU6-42P-201ENST00000384165 107 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 SNORD41-201ENST00000386967 70 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNU1-78P-201ENST00000391248 165 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 SNORA75.5-201ENST00000391291 81 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 AC027119.1-201ENST00000440877 241 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNU7-95P-201ENST00000459222 64 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 RNU2-13P-201ENST00000515909 113 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 SNORA74.3-201ENST00000517108 154 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 FAM106DP-201ENST00000586416 501 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 AL078603.1-201ENST00000603824 313 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 MIR6504-201ENST00000613520 61 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.778-201ENST00000620203 90 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 AC106754.2-201ENST00000623006 233 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 MTND1P7-201ENST00000632801 297 ntBASIC1.6□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.251-201ENST00000364551 99 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 SNORD116-18-201ENST00000383961 92 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 Y_RNA.521-201ENST00000384560 114 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 U8.17-201ENST00000391292 132 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 RNU7-197P-201ENST00000458836 62 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 MIR3129-201ENST00000581095 76 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 SNORA4-201ENST00000584302 138 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 AC015726.2-201ENST00000620112 122 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 MIR376A2-201ENST00000636782 80 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 MIR6844-201ENST00000637122 62 ntBASIC1.59□□□□□ -2.15
VPS4AQ9UN37 SNORD33-201ENST00000362761 85 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 Y_RNA.400-201ENST00000383963 111 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 RNU6-746P-201ENST00000384112 109 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 RNU6-125P-201ENST00000384505 107 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 MIR7-2-201ENST00000384970 110 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 RNA5SP127-201ENST00000411051 133 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 SNORD123-201ENST00000459473 70 ntBASIC1.58□□□□□ -2.16
VPS4AQ9UN37 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS4AQ9UN37 Y_RNA.8-201ENST00000362353 102 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 RNU6-151P-201ENST00000364158 107 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS4AQ9UN37 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.57□□□□□ -2.16
VPS4AQ9UN37 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 RNU6-970P-201ENST00000516312 107 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 SCARNA15-202ENST00000516881 127 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 MIR548AR-201ENST00000582191 57 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 MIR5197-201ENST00000583721 112 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 AL365434.2-201ENST00000607979 234 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 MIR6734-201ENST00000621166 68 ntBASIC1.57□□□□□ -2.16
VPS4AQ9UN37 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS4AQ9UN37 RNY1P11-201ENST00000363759 113 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 Y_RNA.191-201ENST00000363972 113 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 Y_RNA.215-201ENST00000364204 112 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 SNORA40.5-201ENST00000391061 128 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 MIR1276-201ENST00000408707 83 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 RNU6-588P-201ENST00000410281 105 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 AC079140.2-201ENST00000506193 142 ntBASIC1.56□□□□□ -2.16
VPS4AQ9UN37 RNA5SP220-201ENST00000516298 104 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 161.7 ms