Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 Y_RNA.686-201ENST00000516548 134 ntBASIC1.8□□□□□ -2.12
VSX1Q9NZR4 RNU2-60P-201ENST00000517290 128 ntBASIC1.8□□□□□ -2.12
VSX1Q9NZR4 AL022345.2-201ENST00000606307 135 ntBASIC1.8□□□□□ -2.12
VSX1Q9NZR4 MIR8074-201ENST00000615081 81 ntBASIC1.8□□□□□ -2.12
VSX1Q9NZR4 AL590808.1-201ENST00000618696 141 ntBASIC1.8□□□□□ -2.12
VSX1Q9NZR4 RNU6-834P-201ENST00000362367 110 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 Y_RNA.114-201ENST00000363265 113 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 Y_RNA.241-201ENST00000364470 117 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 RNU1-133P-201ENST00000364867 167 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 Y_RNA.351-201ENST00000365436 96 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 SNORD36C-201ENST00000516733 66 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 AC064859.1-201ENST00000624741 174 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 MIR219B-201ENST00000637023 88 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 AC092881.1-201ENST00000638218 2733 ntBASIC1.79□□□□□ -2.12
VSX1Q9NZR4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.78□□□□□ -2.12
VSX1Q9NZR4 RNU6-309P-201ENST00000364573 106 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 RNA5SP205-201ENST00000364653 136 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 Y_RNA.370-201ENST00000365589 108 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 Y_RNA.563-201ENST00000384707 108 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 MIR653-201ENST00000385279 96 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 RN7SKP223-201ENST00000410582 62 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 AL035398.1-201ENST00000430869 322 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 AC093850.1-201ENST00000454121 251 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 RN7SL274P-201ENST00000492268 272 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 RNU7-43P-201ENST00000516554 64 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 Y_RNA.712-201ENST00000517011 92 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 SNORA74.3-201ENST00000517108 154 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 ZNF355P-201ENST00000427301 3216 ntBASIC1.78□□□□□ -2.12
VSX1Q9NZR4 SNORD33-201ENST00000362761 85 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.218-201ENST00000364218 104 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
VSX1Q9NZR4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.77□□□□□ -2.13
VSX1Q9NZR4 RNA5SP261-201ENST00000410536 106 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.77□□□□□ -2.13
VSX1Q9NZR4 RPS29P24-201ENST00000486345 171 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 RNU6-659P-201ENST00000516454 104 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 RNU7-53P-201ENST00000516705 60 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 DEFB122-202ENST00000569013 197 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 MIR5089-201ENST00000580047 84 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 MIR3935-201ENST00000583472 104 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 AL359881.1-201ENST00000602916 267 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.77□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.783-201ENST00000613546 102 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.77□□□□□ -2.13
VSX1Q9NZR4 RNU6-203P-201ENST00000384038 104 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.537-201ENST00000384626 109 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 MIR516B2-201ENST00000385190 85 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.76□□□□□ -2.13
VSX1Q9NZR4 RNA5SP425-201ENST00000410336 112 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 RNU6-893P-201ENST00000458841 100 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 UBL5P3-201ENST00000475112 231 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 RNU6-998P-201ENST00000515894 101 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 RNU6-1333P-201ENST00000516162 93 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 FAM106DP-201ENST00000586416 501 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 AL513534.2-201ENST00000603836 250 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 U6.95-201ENST00000636931 70 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.76□□□□□ -2.13
VSX1Q9NZR4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
VSX1Q9NZR4 RNU6-457P-201ENST00000363999 107 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 MIR526A1-201ENST00000384897 85 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 MIR513A1-201ENST00000385138 129 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 RNA5SP136-201ENST00000410906 107 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.617-201ENST00000410920 90 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.629-201ENST00000411368 105 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VSX1Q9NZR4 SNORD123-201ENST00000459473 70 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 RNU1-41P-201ENST00000516161 162 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 RNU1-48P-201ENST00000516400 162 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 SUMO2P16-201ENST00000519475 264 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 AC090821.2-201ENST00000523552 176 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
VSX1Q9NZR4 AL365222.1-201ENST00000614661 98 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 MIR376A2-201ENST00000636782 80 ntBASIC1.75□□□□□ -2.13
VSX1Q9NZR4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VSX1Q9NZR4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
VSX1Q9NZR4 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.74□□□□□ -2.13
VSX1Q9NZR4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.74□□□□□ -2.13
VSX1Q9NZR4 MIR302B-201ENST00000362188 73 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.346-201ENST00000365385 112 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 SNORA24-201ENST00000384096 131 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 SNORA22C-201ENST00000384614 134 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 MIR30A-201ENST00000385092 71 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 AL451046.2-201ENST00000403074 277 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 AL445685.2-201ENST00000422551 342 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.651-201ENST00000459380 103 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 RNU2-13P-201ENST00000515909 113 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 AC133485.4-201ENST00000561835 220 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 AC138907.4-201ENST00000570107 226 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 MIR3122-201ENST00000577243 73 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 SNORA77B-201ENST00000578179 125 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 AL357312.1-201ENST00000603879 298 ntBASIC1.74□□□□□ -2.13
VSX1Q9NZR4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.74□□□□□ -2.13
VSX1Q9NZR4 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
VSX1Q9NZR4 Y_RNA.273-201ENST00000364703 102 ntBASIC1.73□□□□□ -2.13
VSX1Q9NZR4 RNY1P6-201ENST00000384193 109 ntBASIC1.73□□□□□ -2.13
VSX1Q9NZR4 SUMO2P12-201ENST00000405924 140 ntBASIC1.73□□□□□ -2.13
VSX1Q9NZR4 RNA5SP489-201ENST00000410986 109 ntBASIC1.73□□□□□ -2.13
VSX1Q9NZR4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.73□□□□□ -2.13
VSX1Q9NZR4 RPS29P29-201ENST00000456396 171 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 179.1 ms