Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 MIR215-201ENST00000384858 110 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 RNU6-780P-201ENST00000391030 104 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 MIR548L-201ENST00000408303 86 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 MIR548I3-201ENST00000408378 149 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 AC096949.1-201ENST00000412047 152 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 AL138752.1-201ENST00000452964 351 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 Y_RNA.631-201ENST00000459607 101 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 RNU6-1012P-201ENST00000516606 109 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 RNU6-765P-201ENST00000516916 99 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 AC100767.1-201ENST00000528178 123 ntBASIC-0.5□□□□□ -2.49
SCN3AQ9NY46 MIR30D-201ENST00000362283 70 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 SNORD78.2-201ENST00000391076 69 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 AC026782.1-201ENST00000512952 449 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 AC011921.3-201ENST00000605540 361 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 uc_338.36-201ENST00000622331 158 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 NAA50-211ENST00000630058 177 ntTSL 5 BASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 AC024614.3-201ENST00000637860 256 ntBASIC-0.51□□□□□ -2.49
SCN3AQ9NY46 Y_RNA.27-201ENST00000362540 103 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 RNU4-80P-201ENST00000363200 141 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 Y_RNA.409-201ENST00000383990 98 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 RNU4-30P-201ENST00000410245 143 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 RNU6-1016P-201ENST00000516689 94 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 AP003072.1-201ENST00000531740 145 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 RNU6-1059P-201ENST00000363752 98 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 MIR196A2-201ENST00000385189 110 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 MIR516B1-201ENST00000385211 90 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 MIR1278-201ENST00000408753 81 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 SNORA36B-201ENST00000410438 131 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 RNU6-470P-201ENST00000515954 104 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 RNU6-966P-201ENST00000516479 104 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 uc_338.28-201ENST00000612082 187 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.52□□□□□ -2.49
SCN3AQ9NY46 Y_RNA.241-201ENST00000364470 117 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 SNORA26.5-201ENST00000391215 123 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 AC087499.4-201ENST00000448505 178 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 CHEK2P4-201ENST00000450340 246 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 MIR2053-201ENST00000459295 91 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 RNU6-314P-201ENST00000516574 104 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 RNU6-835P-201ENST00000516974 104 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 MIR4432-201ENST00000581823 84 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 MIR1244-1-201ENST00000612829 85 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 MIR1244-3-201ENST00000635744 85 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 MIR1244-2-201ENST00000636449 85 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 MIR1244-4-202ENST00000636813 85 ntBASIC-0.53□□□□□ -2.49
SCN3AQ9NY46 RNU6-451P-201ENST00000362921 107 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.301-201ENST00000364990 103 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 RNU4-70P-201ENST00000384579 139 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 AC107297.1-201ENST00000459991 176 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 RNU7-161P-201ENST00000517289 62 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 MIR3152-201ENST00000579801 74 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 MIR1321-201ENST00000637766 79 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 AL596211.1-201ENST00000569873 2277 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 RNU6-403P-201ENST00000363163 104 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 SNORA75-201ENST00000384158 137 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 RNU6-1281P-201ENST00000516223 105 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 AC122108.2-201ENST00000611946 526 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 MIR6082-201ENST00000613604 109 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 MIR548AY-201ENST00000617669 107 ntBASIC-0.54□□□□□ -2.5
SCN3AQ9NY46 RNU6-1090P-201ENST00000364065 94 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.570-201ENST00000384750 101 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 SNORD75.1-201ENST00000408373 60 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-1309P-201ENST00000363305 108 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.157-201ENST00000363638 102 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-1209P-201ENST00000363655 107 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-1048P-201ENST00000364054 107 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-811P-201ENST00000384069 107 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-1013P-201ENST00000384180 107 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-155P-201ENST00000516347 100 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 AP003733.2-201ENST00000529409 171 ntBASIC-0.55□□□□□ -2.5
SCN3AQ9NY46 RNU6-510P-201ENST00000391239 108 ntBASIC-0.56□□□□□ -2.5
SCN3AQ9NY46 RNU6-408P-201ENST00000515910 100 ntBASIC-0.56□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.56□□□□□ -2.5
SCN3AQ9NY46 AL356055.1-201ENST00000602528 446 ntBASIC-0.56□□□□□ -2.5
SCN3AQ9NY46 RNU4-58P-201ENST00000363192 141 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 RNU4-75P-201ENST00000364621 146 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 RNU6-1042P-201ENST00000384204 107 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.615-201ENST00000410769 117 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 AC023449.1-201ENST00000454464 154 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.693-201ENST00000516641 110 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 SNORA70.25-201ENST00000612741 95 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 AP001282.2-201ENST00000616149 309 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 MIR4788-201ENST00000639104 80 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.72-201ENST00000362894 103 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.146-201ENST00000363549 102 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 RNU6-879P-201ENST00000364328 108 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 SNORA72.4-201ENST00000384174 132 ntBASIC-0.57□□□□□ -2.5
SCN3AQ9NY46 Y_RNA.582-201ENST00000391023 95 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 244.9 ms