Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 Y_RNA.240-201ENST00000364469 95 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 SNORA1.2-201ENST00000365189 134 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 MIR520C-201ENST00000385005 87 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 MIR320A-201ENST00000385302 82 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 RNU7-181P-201ENST00000517234 74 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 AC097639.2-201ENST00000603159 172 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 AL161722.3-201ENST00000605789 2983 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 AC134878.1-201ENST00000619901 243 ntBASIC1.53□□□□□ -2.16
PAAF1Q9BRP4 Y_RNA.150-201ENST00000363562 102 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 AC107297.1-201ENST00000459991 176 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 SNORD111.1-201ENST00000516421 86 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 MIR3122-201ENST00000577243 73 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 AC098479.1-201ENST00000609225 154 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 MIR8070-201ENST00000616510 88 ntBASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.241-201ENST00000364470 117 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.337-201ENST00000365312 102 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.370-201ENST00000365589 108 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 MIR518F-201ENST00000384973 87 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 SNORD41-201ENST00000386967 70 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 RNU2-64P-201ENST00000411315 191 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 RPS27P16-201ENST00000425758 201 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 AC087499.4-201ENST00000448505 178 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 AC023790.1-201ENST00000482174 347 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 RNU7-43P-201ENST00000516554 64 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 RNU6-902P-201ENST00000517212 91 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 AL512310.8-201ENST00000550183 120 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 MIR3129-201ENST00000581095 76 ntBASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.51□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.37-201ENST00000362606 108 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 SNORA25.7-201ENST00000364375 127 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 RNU4-57P-201ENST00000515980 135 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 RN7SKP88-201ENST00000516847 250 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 AC007751.1-201ENST00000529260 376 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 MIR3664-201ENST00000579074 99 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 MIR4764-201ENST00000580680 88 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 MIR548AR-201ENST00000582191 57 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 7SK.8-201ENST00000612110 250 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 7SK.11-201ENST00000615477 250 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 AL157834.3-201ENST00000615543 103 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 7SK.13-201ENST00000622040 250 ntBASIC1.5□□□□□ -2.17
PAAF1Q9BRP4 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 U8.1-201ENST00000362843 134 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 RNY1P10-201ENST00000363268 113 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 MIR548A2-201ENST00000384956 97 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 AF228730.3-201ENST00000436691 102 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 AC074198.2-201ENST00000508153 258 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 SNORA18.4-201ENST00000516440 124 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 AP003484.1-201ENST00000530974 250 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 FTX_2.1-201ENST00000618816 94 ntBASIC1.49□□□□□ -2.17
PAAF1Q9BRP4 SNORA1-201ENST00000384107 130 ntBASIC1.48□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.542-201ENST00000384641 111 ntBASIC1.48□□□□□ -2.17
PAAF1Q9BRP4 RNU6-907P-201ENST00000390924 102 ntBASIC1.48□□□□□ -2.17
PAAF1Q9BRP4 RNU6-239P-201ENST00000390990 99 ntBASIC1.48□□□□□ -2.17
PAAF1Q9BRP4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 RNU4-84P-201ENST00000364200 139 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 RNU6-392P-201ENST00000364926 101 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 RNU6-53P-201ENST00000365367 106 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 RNU6-1189P-201ENST00000383958 107 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 Y_RNA.410-201ENST00000383992 113 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 SNORD28B-201ENST00000390993 75 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 SNORD37.2-201ENST00000391075 66 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 AC104465.1-201ENST00000611365 139 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 AL353770.2-201ENST00000620024 78 ntBASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.47□□□□□ -2.17
PAAF1Q9BRP4 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 MIR337-201ENST00000362281 93 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 RNU6-978P-201ENST00000364371 103 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 Y_RNA.393-201ENST00000383936 102 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 MIR570-201ENST00000384917 97 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 RNU5E-9P-201ENST00000411164 104 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 AC004223.1-201ENST00000479840 271 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 RNA5SP61-201ENST00000516453 100 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 CYP3A52P-201ENST00000563326 91 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 MIR6844-201ENST00000637122 62 ntBASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
PAAF1Q9BRP4 Y_RNA.272-201ENST00000364696 102 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 RNU6-886P-201ENST00000384319 105 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 RNU6-768P-201ENST00000384683 107 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 SNORA40.5-201ENST00000391061 128 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 RPS29P29-201ENST00000456396 171 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 RNU1-123P-201ENST00000458950 160 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 RNU7-67P-201ENST00000459003 62 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 SNORD36C-201ENST00000516733 66 ntBASIC1.45□□□□□ -2.18
PAAF1Q9BRP4 AC090821.2-201ENST00000523552 176 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 184.3 ms