Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SNORD109B-201ENST00000458961 67 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 SNORD109A-201ENST00000459128 67 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 AC005908.1-201ENST00000468701 347 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 RNU7-123P-201ENST00000515911 60 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 RNA5SP282-201ENST00000516355 108 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 MIR3152-201ENST00000579801 74 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 AC103810.8-201ENST00000607347 118 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 AC010297.1-201ENST00000623948 149 ntBASIC2.03□□□□□ -2.08
CCDC140Q96MF4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.08
CCDC140Q96MF4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.02□□□□□ -2.09
CCDC140Q96MF4 MIR759-201ENST00000390224 91 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 MIR676-201ENST00000390702 67 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 HMGN2P23-201ENST00000456759 269 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC140Q96MF4 snoU13.9-201ENST00000458927 103 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 COX6CP6-201ENST00000490840 228 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 RNU6-947P-201ENST00000516264 106 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 AC022523.2-201ENST00000561045 150 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 AC015688.6-201ENST00000577737 104 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 MIR4672-201ENST00000583126 81 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 AC008133.2-201ENST00000624540 351 ntBASIC2.02□□□□□ -2.09
CCDC140Q96MF4 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC140Q96MF4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC140Q96MF4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC140Q96MF4 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
CCDC140Q96MF4 MIR449A-201ENST00000362113 91 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 Y_RNA.35-201ENST00000362601 101 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 SNORA24-201ENST00000384096 131 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 RNU6-1104P-201ENST00000384723 104 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 RNA5SP144-201ENST00000410846 116 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 RNA5SP184-201ENST00000411071 108 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 AL512326.2-201ENST00000426359 151 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 HMGN1P33-201ENST00000432945 451 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 HSPE1P24-201ENST00000450782 238 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC140Q96MF4 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.01□□□□□ -2.09
CCDC140Q96MF4 MIR4319-201ENST00000577285 85 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 MIR3683-201ENST00000580847 82 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 MIR3162-201ENST00000581818 82 ntBASIC2.01□□□□□ -2.09
CCDC140Q96MF4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2□□□□□ -2.09
CCDC140Q96MF4 AC062016.1-201ENST00000355719 319 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 SNORA22-201ENST00000383907 134 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 MIR144-201ENST00000384886 86 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU6-1319P-201ENST00000390855 104 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU6-747P-201ENST00000390928 104 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU6-241P-201ENST00000391148 104 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU6-177P-201ENST00000411257 104 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 AL022718.1-201ENST00000412004 84 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 MTATP6P29-201ENST00000415057 132 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU7-73P-201ENST00000458743 63 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU7-41P-201ENST00000515917 61 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 RNU6-826P-201ENST00000516827 104 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 AL513534.2-201ENST00000603836 250 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 AL627230.6-201ENST00000611129 280 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 AC009831.4-201ENST00000620744 325 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 WARS-244ENST00000627608 123 ntTSL 5 BASIC2□□□□□ -2.09
CCDC140Q96MF4 WWP1P1-201ENST00000466609 2769 ntBASIC2□□□□□ -2.09
CCDC140Q96MF4 Y_RNA.171-201ENST00000363760 102 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 Y_RNA.198-201ENST00000364013 98 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 Y_RNA.213-201ENST00000364178 111 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 RNU6-301P-201ENST00000384277 107 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 MT-TI-201ENST00000387365 69 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 RPS27P21-201ENST00000486977 252 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 DNAJC19P9-201ENST00000555084 351 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 AL020996.3-201ENST00000606617 222 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 MIR6717-201ENST00000622747 73 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 MIR4251-201ENST00000635819 61 ntBASIC1.99□□□□□ -2.09
CCDC140Q96MF4 SNORA63.4-201ENST00000362763 126 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 MIR30A-201ENST00000385092 71 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 SNORD41-201ENST00000386967 70 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 RNY4P18-201ENST00000391107 89 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 RNA5SP261-201ENST00000410536 106 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 AL356379.1-201ENST00000414105 126 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 POLR2J4-204ENST00000418424 324 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 snoU13.16-201ENST00000459350 104 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 RN7SL429P-201ENST00000479090 223 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 RN7SL489P-201ENST00000486185 223 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 RN7SL327P-201ENST00000488659 223 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 AC019176.1-201ENST00000518519 225 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 AC004812.1-201ENST00000540773 146 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 AC007012.1-201ENST00000567192 175 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 MIR5092-201ENST00000583139 88 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 RN7SL853P-201ENST00000617250 223 ntBASIC1.98□□□□□ -2.09
CCDC140Q96MF4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC140Q96MF4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.97□□□□□ -2.09
CCDC140Q96MF4 SNORA22.1-201ENST00000362701 134 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 MIR196B-201ENST00000384852 84 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 RNU7-113P-201ENST00000459273 62 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 SNORD111.1-201ENST00000516421 86 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 Y_RNA.709-201ENST00000516952 92 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 SNORA44.1-201ENST00000517031 108 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.97□□□□□ -2.09
CCDC140Q96MF4 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC140Q96MF4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
CCDC140Q96MF4 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
CCDC140Q96MF4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC140Q96MF4 SNORA1.1-201ENST00000364671 133 ntBASIC1.96□□□□□ -2.1
CCDC140Q96MF4 RNA5SP126-201ENST00000365092 109 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms