Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR4498-201ENST00000577599 66 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 RNU6-94P-201ENST00000607728 107 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 AC108706.1-201ENST00000611053 297 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 AC104465.1-201ENST00000611365 139 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 AP001282.2-201ENST00000616149 309 ntBASIC0.55□□□□□ -2.32
RPUSD4Q96CM3 MIR337-201ENST00000362281 93 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 SNORD45.3-201ENST00000363836 72 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.229-201ENST00000364347 113 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 RNU6-1335P-201ENST00000365426 107 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 RNU6-1289P-201ENST00000384431 106 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 SNORA26-201ENST00000391286 122 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 COX6CP6-201ENST00000490840 228 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 RNA5SP153-201ENST00000516498 76 ntBASIC0.54□□□□□ -2.32
RPUSD4Q96CM3 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 RNU6-369P-201ENST00000362515 102 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.37-201ENST00000362606 108 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.44-201ENST00000362676 108 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.66-201ENST00000362862 102 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 Y_RNA.338-201ENST00000365320 114 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 RNU6-484P-201ENST00000384016 107 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 RNU6-125P-201ENST00000384505 107 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 SNORA2B-201ENST00000384583 137 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 RNU6-994P-201ENST00000410507 111 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 AC004941.2-201ENST00000427009 228 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 SNORA18.4-201ENST00000516440 124 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 MIR4282-201ENST00000583613 67 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 AP000753.3-201ENST00000604083 169 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 MIR8055-201ENST00000610739 97 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 U2.14-201ENST00000615943 113 ntBASIC0.53□□□□□ -2.32
RPUSD4Q96CM3 RNY1P10-201ENST00000363268 113 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.241-201ENST00000364470 117 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 SNORA63C-201ENST00000364578 129 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 SNORD61-201ENST00000384252 73 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.494-201ENST00000384432 111 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 SNORD105-201ENST00000386910 85 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 MTND5P22-201ENST00000458380 195 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 TRBVB-201ENST00000477100 408 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 RNU6-504P-201ENST00000516568 104 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 RNU6-365P-201ENST00000517113 106 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 AP003484.1-201ENST00000530974 250 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 AC006006.1-201ENST00000603082 144 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 AC134878.1-201ENST00000619901 243 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 Z97988.1-201ENST00000637697 135 ntBASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.52□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.410-201ENST00000383992 113 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 SNORD99-201ENST00000408612 74 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 RNA5SP95-201ENST00000410319 137 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 RNU6-321P-201ENST00000410912 106 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 RPS26P5-201ENST00000418544 335 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 RNU6-1053P-201ENST00000515930 101 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 RNU6-693P-201ENST00000516134 107 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 RNU7-53P-201ENST00000516705 60 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 DEFB108E-201ENST00000524692 240 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 AL590095.2-201ENST00000604136 117 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 uc_338.17-201ENST00000619633 179 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 MIR6835-201ENST00000621552 64 ntBASIC0.51□□□□□ -2.33
RPUSD4Q96CM3 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 MIR1-1-201ENST00000362147 71 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 MIR373-201ENST00000362273 69 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.304-201ENST00000365011 112 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 SNORA27-201ENST00000384323 126 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 MIR92A1-201ENST00000385233 78 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 MIR616-201ENST00000385293 97 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 MIR548F4-201ENST00000408515 105 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 AC244098.3-201ENST00000424803 96 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 AC244023.1-201ENST00000426884 112 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 RPS29P24-201ENST00000486345 171 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 RNU6-237P-201ENST00000515985 71 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 AC242498.1-201ENST00000604134 111 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 7SK.10-201ENST00000621414 298 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 MIR6767-201ENST00000637302 66 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 AC023934.1-201ENST00000574529 2389 ntBASIC0.5□□□□□ -2.33
RPUSD4Q96CM3 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.24-201ENST00000362508 103 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU4-10P-201ENST00000364383 140 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.237-201ENST00000364439 102 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU6-740P-201ENST00000364734 105 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.634-201ENST00000364811 113 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU6-713P-201ENST00000384761 107 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU6-1228P-201ENST00000391014 107 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU1-119P-201ENST00000391122 165 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 AC090844.1-201ENST00000422019 156 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU7-96P-201ENST00000459535 64 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 RNU6-1299P-201ENST00000516316 100 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 MIR8062-201ENST00000621515 85 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 U6.104-201ENST00000637979 90 ntBASIC0.49□□□□□ -2.33
RPUSD4Q96CM3 Y_RNA.117-201ENST00000363294 101 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 MIR508-201ENST00000384857 115 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 RNU6-913P-201ENST00000390913 95 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 RNU7-67P-201ENST00000459003 62 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 RNA5SP102-201ENST00000516865 106 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 SCARNA24.2-201ENST00000516968 130 ntBASIC0.48□□□□□ -2.33
RPUSD4Q96CM3 RNU6-570P-201ENST00000517051 105 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 241.2 ms