Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC009779.6-201ENST00000603972 165 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.802-201ENST00000614892 130 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR6788-201ENST00000618842 66 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 HSBP1P2-201ENST00000299671 229 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 MIR367-201ENST00000362299 68 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.65-201ENST00000362846 100 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-268P-201ENST00000364174 107 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.274-201ENST00000364714 101 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.336-201ENST00000365307 109 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-1138P-201ENST00000365359 106 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-484P-201ENST00000384016 107 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-163P-201ENST00000384396 106 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 SNORA8.3-201ENST00000384679 139 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-131P-201ENST00000391144 107 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 MIR891A-201ENST00000401237 79 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RPS3AP1-201ENST00000413190 320 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 MLLT10P1-201ENST00000418346 262 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-197P-201ENST00000516680 100 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RNU7-149P-201ENST00000516739 59 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 AC007751.1-201ENST00000529260 376 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 AC130289.1-201ENST00000577321 73 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 MIR5688-201ENST00000580619 83 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 AL049861.1-201ENST00000603130 150 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 uc_338.4-201ENST00000616635 176 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 RMST_2.1-201ENST00000617263 136 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 AC078938.1-201ENST00000620993 318 ntBASIC0.85□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.486-201ENST00000384398 107 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 MIR516B2-201ENST00000385190 85 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 RNA5SP496-201ENST00000391240 109 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 RNU4-71P-201ENST00000516258 113 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 AC087685.1-201ENST00000587507 141 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 AC006441.5-201ENST00000612680 209 ntBASIC0.84□□□□□ -2.27
ZNF540Q8NDQ6 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.84□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.66-201ENST00000362862 102 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.91-201ENST00000363042 107 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.188-201ENST00000363952 111 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 SNORA20.1-201ENST00000364790 130 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 snoU2-30.1-201ENST00000365012 70 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU4-17P-201ENST00000365598 141 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-47P-201ENST00000383866 107 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 MIR489-201ENST00000384923 84 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 MIR532-201ENST00000385025 91 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 MIR616-201ENST00000385293 97 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.587-201ENST00000391210 103 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-918P-201ENST00000391219 106 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-493P-201ENST00000391321 108 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 FABP5P4-201ENST00000437203 171 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU7-90P-201ENST00000459216 62 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RPS29P1-201ENST00000465274 159 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU4-57P-201ENST00000515980 135 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.679-201ENST00000516416 91 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-388P-201ENST00000517012 105 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-389P-201ENST00000517048 105 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-1271P-201ENST00000517049 105 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 MIR2681-201ENST00000581814 105 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 AC006006.1-201ENST00000603082 144 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 AC097639.2-201ENST00000603159 172 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 AC013244.2-201ENST00000603396 103 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 AL096861.1-201ENST00000610899 123 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 AL391903.3-201ENST00000612158 163 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 JPX_2.1-201ENST00000614161 69 ntBASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
ZNF540Q8NDQ6 AC008163.1-202ENST00000636004 2889 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 MIR411-201ENST00000362239 96 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.262-201ENST00000364641 102 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-923P-201ENST00000364753 107 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.308-201ENST00000365043 101 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.401-201ENST00000383965 117 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 MIR613-201ENST00000385248 95 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 SNORD28B-201ENST00000390993 75 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-938P-201ENST00000411285 103 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 SNRPGP8-201ENST00000454064 226 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 RN7SKP164-201ENST00000516138 266 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.666-201ENST00000516187 112 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 MIR3192-201ENST00000584920 77 ntBASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.82□□□□□ -2.28
ZNF540Q8NDQ6 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 SNORD45.3-201ENST00000363836 72 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.363-201ENST00000365529 113 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 MIR518F-201ENST00000384973 87 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 MIR452-201ENST00000385020 85 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 MIR146A-201ENST00000385201 99 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 AL606845.1-201ENST00000404881 255 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 MIR548J-201ENST00000408833 112 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 Y_RNA.618-201ENST00000410949 107 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 HMGN2P32-201ENST00000444648 269 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-830P-201ENST00000516353 107 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 RNU7-25P-201ENST00000516544 62 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 MIR376A2-201ENST00000636782 80 ntBASIC0.81□□□□□ -2.28
ZNF540Q8NDQ6 RNU6-1084P-201ENST00000362498 107 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms