Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RPS26P48-201ENST00000491713 339 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 AC090255.1-201ENST00000495779 349 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 RNU6-589P-201ENST00000516485 107 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 MIR5089-201ENST00000580047 84 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 MIR4648-201ENST00000580107 72 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXA4Q00056 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXA4Q00056 MIR342-201ENST00000362212 99 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 Y_RNA.241-201ENST00000364470 117 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 RNA5SP37-201ENST00000365420 130 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 MIRLET7F2-201ENST00000385277 83 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 MIR1261-201ENST00000408659 82 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 MIR1267-201ENST00000408723 78 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 AC244636.1-201ENST00000421152 228 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 RNU6-1061P-201ENST00000516530 99 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 RNU1-40P-201ENST00000516816 164 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 RNU1-97P-201ENST00000516872 164 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 FAM106DP-201ENST00000586416 501 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 MIR6895-201ENST00000613497 78 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 AP000553.5-201ENST00000641933 54 ntBASIC1.7□□□□□ -2.14
HOXA4Q00056 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXA4Q00056 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.7□□□□□ -2.14
HOXA4Q00056 AC008555.8-201ENST00000623602 2168 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.69□□□□□ -2.14
HOXA4Q00056 RNU6-1298P-201ENST00000362456 101 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 SNORA27-201ENST00000384323 126 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
HOXA4Q00056 SNORD28B-201ENST00000390993 75 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 PDCD5P2-201ENST00000507570 312 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 Y_RNA.709-201ENST00000516952 92 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 IGLV3-17-201ENST00000519099 244 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 AC133485.4-201ENST00000561835 220 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 AC022254.1-201ENST00000567857 235 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 AC138907.4-201ENST00000570107 226 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 MIR4287-201ENST00000579398 78 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 MIR548AR-201ENST00000582191 57 ntBASIC1.69□□□□□ -2.14
HOXA4Q00056 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.69□□□□□ -2.14
HOXA4Q00056 RNU6-1123P-201ENST00000362347 106 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 Y_RNA.35-201ENST00000362601 101 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 RNU6-647P-201ENST00000364243 107 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 RNU6-1056P-201ENST00000383996 107 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 SNORA48.3-201ENST00000391081 134 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 AL161935.2-201ENST00000414627 60 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 RPL23AP6-201ENST00000446637 472 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 RN7SKP19-201ENST00000516016 252 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 SNORA31.4-201ENST00000516049 129 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 RNU6-917P-201ENST00000516294 104 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 AC121758.2-201ENST00000553271 193 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 HSPE1P19-201ENST00000603327 295 ntBASIC1.68□□□□□ -2.14
HOXA4Q00056 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.67□□□□□ -2.14
HOXA4Q00056 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-34-201ENST00000362441 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-12-201ENST00000362583 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-29-201ENST00000362834 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-9-201ENST00000362912 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-21-201ENST00000362963 81 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-14-201ENST00000363090 81 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-13-201ENST00000363358 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-41-201ENST00000363608 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-11-201ENST00000363616 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-5-201ENST00000363633 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-39-201ENST00000363694 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-4-201ENST00000363810 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-16-201ENST00000363887 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-6-201ENST00000363942 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-42-201ENST00000364273 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-15-201ENST00000364809 81 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 RNU1-133P-201ENST00000364867 167 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-1-201ENST00000364961 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-26-201ENST00000365067 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-10-201ENST00000365073 81 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-43-201ENST00000365503 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 Y_RNA.366-201ENST00000365540 102 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 Y_RNA.370-201ENST00000365589 108 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-36-201ENST00000365629 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 MIR570-201ENST00000384917 97 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 AL627390.1-201ENST00000396055 340 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 MIR1289-2-201ENST00000408360 111 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNX2P2-201ENST00000424553 323 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 JTBP1-201ENST00000441314 247 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD123-201ENST00000459473 70 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 RNU6-240P-201ENST00000516098 97 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 RN7SKP179-201ENST00000516126 217 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 RNU7-70P-201ENST00000516941 66 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 DEFB122-202ENST00000569013 197 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 MIR4299-201ENST00000577899 72 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 SNORD115-40-201ENST00000606510 82 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 MIR219B-201ENST00000637023 88 ntBASIC1.67□□□□□ -2.14
HOXA4Q00056 AL596211.1-201ENST00000569873 2277 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
HOXA4Q00056 RNU6-349P-201ENST00000362402 107 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 RNU6-414P-201ENST00000363705 104 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 MIR548A1-201ENST00000385041 97 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 MT-TI-201ENST00000387365 69 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.66□□□□□ -2.14
HOXA4Q00056 AC063976.4-201ENST00000421971 163 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
HOXA4Q00056 RNU7-80P-201ENST00000459562 61 ntBASIC1.66□□□□□ -2.14
HOXA4Q00056 AC090821.2-201ENST00000523552 176 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms