Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 Y_RNA.495-201ENST00000384435 112 ntBASIC2.32□□□□□ -2.04
RNF4P78317 RNA5SP144-201ENST00000410846 116 ntBASIC2.32□□□□□ -2.04
RNF4P78317 UBL5P3-201ENST00000475112 231 ntBASIC2.32□□□□□ -2.04
RNF4P78317 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.32□□□□□ -2.04
RNF4P78317 AC103810.6-201ENST00000606708 136 ntBASIC2.32□□□□□ -2.04
RNF4P78317 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
RNF4P78317 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
RNF4P78317 AC092881.1-201ENST00000638218 2733 ntBASIC2.32□□□□□ -2.04
RNF4P78317 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
RNF4P78317 Y_RNA.163-201ENST00000363702 113 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNA5SP456-201ENST00000364002 114 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNU6-32P-201ENST00000383948 107 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNU6-13P-201ENST00000384248 107 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNU6-12P-201ENST00000384604 107 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNU6-41P-201ENST00000384741 107 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNA5SP181-201ENST00000410246 98 ntBASIC2.31□□□□□ -2.04
RNF4P78317 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.31□□□□□ -2.04
RNF4P78317 RNU7-67P-201ENST00000459003 62 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RPL39P34-201ENST00000477141 156 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNU6-958P-201ENST00000516995 106 ntBASIC2.31□□□□□ -2.04
RNF4P78317 RNA5SP170-201ENST00000517150 101 ntBASIC2.31□□□□□ -2.04
RNF4P78317 MIR548AR-201ENST00000582191 57 ntBASIC2.31□□□□□ -2.04
RNF4P78317 FAM106DP-201ENST00000586416 501 ntBASIC2.31□□□□□ -2.04
RNF4P78317 AC106754.2-201ENST00000623006 233 ntBASIC2.31□□□□□ -2.04
RNF4P78317 MIR6073-201ENST00000352083 89 ntBASIC2.3□□□□□ -2.04
RNF4P78317 MIR449A-201ENST00000362113 91 ntBASIC2.3□□□□□ -2.04
RNF4P78317 RNA5SP276-201ENST00000362580 94 ntBASIC2.3□□□□□ -2.04
RNF4P78317 Y_RNA.344-201ENST00000365381 112 ntBASIC2.3□□□□□ -2.04
RNF4P78317 AL512326.2-201ENST00000426359 151 ntBASIC2.3□□□□□ -2.04
RNF4P78317 AL513328.1-201ENST00000446460 224 ntBASIC2.3□□□□□ -2.04
RNF4P78317 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.3□□□□□ -2.04
RNF4P78317 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.3□□□□□ -2.04
RNF4P78317 IGKV3-31-201ENST00000523109 329 ntBASIC2.3□□□□□ -2.04
RNF4P78317 AL513534.2-201ENST00000603836 250 ntBASIC2.3□□□□□ -2.04
RNF4P78317 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.3□□□□□ -2.04
RNF4P78317 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
RNF4P78317 RNU6-1014P-201ENST00000383940 103 ntBASIC2.29□□□□□ -2.04
RNF4P78317 RNU6-203P-201ENST00000384038 104 ntBASIC2.29□□□□□ -2.04
RNF4P78317 SNORA70.7-201ENST00000384159 133 ntBASIC2.29□□□□□ -2.04
RNF4P78317 MIR548D2-201ENST00000384955 97 ntBASIC2.29□□□□□ -2.04
RNF4P78317 RNU6-1190P-201ENST00000410811 104 ntBASIC2.29□□□□□ -2.04
RNF4P78317 AL022718.1-201ENST00000412004 84 ntBASIC2.29□□□□□ -2.04
RNF4P78317 RPS29P29-201ENST00000456396 171 ntBASIC2.29□□□□□ -2.04
RNF4P78317 RNU2-19P-201ENST00000517288 84 ntBASIC2.29□□□□□ -2.04
RNF4P78317 MIR3163-201ENST00000581592 73 ntBASIC2.29□□□□□ -2.04
RNF4P78317 MIR4791-201ENST00000607666 84 ntBASIC2.29□□□□□ -2.04
RNF4P78317 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.29□□□□□ -2.04
RNF4P78317 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.29□□□□□ -2.04
RNF4P78317 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
RNF4P78317 RNU4-82P-201ENST00000362443 140 ntBASIC2.28□□□□□ -2.04
RNF4P78317 Y_RNA.49-201ENST00000362714 112 ntBASIC2.28□□□□□ -2.04
RNF4P78317 RNU6-756P-201ENST00000383997 107 ntBASIC2.28□□□□□ -2.04
RNF4P78317 AL359511.1-201ENST00000402970 211 ntBASIC2.28□□□□□ -2.04
RNF4P78317 AC055731.1-201ENST00000474387 401 ntBASIC2.28□□□□□ -2.04
RNF4P78317 RNU7-6P-201ENST00000516845 62 ntBASIC2.28□□□□□ -2.04
RNF4P78317 MIR4513-201ENST00000581077 86 ntBASIC2.28□□□□□ -2.04
RNF4P78317 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC2.28□□□□□ -2.04
RNF4P78317 AL596028.1-201ENST00000326971 197 ntBASIC2.27□□□□□ -2.05
RNF4P78317 Y_RNA.171-201ENST00000363760 102 ntBASIC2.27□□□□□ -2.05
RNF4P78317 MIR1302-5-201ENST00000408164 150 ntBASIC2.27□□□□□ -2.05
RNF4P78317 POLR2J4-204ENST00000418424 324 ntBASIC2.27□□□□□ -2.05
RNF4P78317 AC234781.5-201ENST00000508429 271 ntBASIC2.27□□□□□ -2.05
RNF4P78317 RNU7-53P-201ENST00000516705 60 ntBASIC2.27□□□□□ -2.05
RNF4P78317 RNU6-537P-201ENST00000517277 103 ntBASIC2.27□□□□□ -2.05
RNF4P78317 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.27□□□□□ -2.05
RNF4P78317 AC004812.1-201ENST00000540773 146 ntBASIC2.27□□□□□ -2.05
RNF4P78317 AC243994.1-201ENST00000618627 109 ntBASIC2.27□□□□□ -2.05
RNF4P78317 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
RNF4P78317 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
RNF4P78317 U8.6-201ENST00000364939 135 ntBASIC2.26□□□□□ -2.05
RNF4P78317 Y_RNA.323-201ENST00000365157 109 ntBASIC2.26□□□□□ -2.05
RNF4P78317 SNORA51.5-201ENST00000384126 131 ntBASIC2.26□□□□□ -2.05
RNF4P78317 SNORA67.4-201ENST00000384688 142 ntBASIC2.26□□□□□ -2.05
RNF4P78317 RNU6-913P-201ENST00000390913 95 ntBASIC2.26□□□□□ -2.05
RNF4P78317 SNORD23.1-201ENST00000408212 104 ntBASIC2.26□□□□□ -2.05
RNF4P78317 RPL23AP6-201ENST00000446637 472 ntBASIC2.26□□□□□ -2.05
RNF4P78317 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.26□□□□□ -2.05
RNF4P78317 RPL23AP94-201ENST00000512518 302 ntBASIC2.26□□□□□ -2.05
RNF4P78317 RNU6-917P-201ENST00000516294 104 ntBASIC2.26□□□□□ -2.05
RNF4P78317 AC095038.3-201ENST00000634439 195 ntBASIC2.26□□□□□ -2.05
RNF4P78317 Y_RNA.309-201ENST00000365046 111 ntBASIC2.25□□□□□ -2.05
RNF4P78317 Y_RNA.328-201ENST00000365208 113 ntBASIC2.25□□□□□ -2.05
RNF4P78317 RNU6-360P-201ENST00000390944 104 ntBASIC2.25□□□□□ -2.05
RNF4P78317 RNU2-13P-201ENST00000515909 113 ntBASIC2.25□□□□□ -2.05
RNF4P78317 Y_RNA.677-201ENST00000516401 85 ntBASIC2.25□□□□□ -2.05
RNF4P78317 RNU6-1258P-201ENST00000516911 111 ntBASIC2.25□□□□□ -2.05
RNF4P78317 AC068339.1-201ENST00000526965 141 ntBASIC2.25□□□□□ -2.05
RNF4P78317 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
RNF4P78317 RNU6-766P-201ENST00000362478 107 ntBASIC2.24□□□□□ -2.05
RNF4P78317 Y_RNA.43-201ENST00000362670 111 ntBASIC2.24□□□□□ -2.05
RNF4P78317 SNORA22.1-201ENST00000362701 134 ntBASIC2.24□□□□□ -2.05
RNF4P78317 SNORA24-201ENST00000384096 131 ntBASIC2.24□□□□□ -2.05
RNF4P78317 RNU6-439P-201ENST00000384188 106 ntBASIC2.24□□□□□ -2.05
RNF4P78317 Y_RNA.531-201ENST00000384589 121 ntBASIC2.24□□□□□ -2.05
RNF4P78317 SNORA19.1-201ENST00000410656 129 ntBASIC2.24□□□□□ -2.05
RNF4P78317 HMGN1P33-201ENST00000432945 451 ntBASIC2.24□□□□□ -2.05
RNF4P78317 RPS12P2-201ENST00000439728 269 ntBASIC2.24□□□□□ -2.05
RNF4P78317 RNU7-113P-201ENST00000459273 62 ntBASIC2.24□□□□□ -2.05
RNF4P78317 RPS23P4-201ENST00000487908 423 ntBASIC2.24□□□□□ -2.05
RNF4P78317 SNORA74.3-201ENST00000517108 154 ntBASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 370 ms