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Protein–RNA interactions for Protein: P55283
CDH4, Cadherin-4, human
Predictions only
Length
916 aa
.
Download Table
Protein
RNA
Prediction (catRAPID)
Interaction (ENCODE eCLIP)
Gene
UniProt Accession
Transcript Symbol
Ensembl Transcript ID
Length
Transcript Status
Prediction Score
Prediction z-Score
p-Value
Fold Change
CDH4
P55283
DIP2A-IT1-201
ENST00000442434
428 nt
TSL 2
BASIC
0.35
□□□□□ -2.35
CDH4
P55283
SNORA68.3-201
ENST00000515906
83 nt
BASIC
0.35
□□□□□ -2.35
CDH4
P55283
AL049861.1-201
ENST00000603130
150 nt
BASIC
0.35
□□□□□ -2.35
CDH4
P55283
uc_338.6-201
ENST00000613544
171 nt
BASIC
0.35
□□□□□ -2.35
CDH4
P55283
AC090971.5-201
ENST00000621102
293 nt
BASIC
0.35
□□□□□ -2.35
CDH4
P55283
SNORD115-34-201
ENST00000362441
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-12-201
ENST00000362583
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
RNU6-1272P-201
ENST00000362776
107 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-29-201
ENST00000362834
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-9-201
ENST00000362912
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-21-201
ENST00000362963
81 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-14-201
ENST00000363090
81 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-13-201
ENST00000363358
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-41-201
ENST00000363608
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-11-201
ENST00000363616
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-5-201
ENST00000363633
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-39-201
ENST00000363694
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-4-201
ENST00000363810
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-16-201
ENST00000363887
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-6-201
ENST00000363942
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-42-201
ENST00000364273
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
RNU6-450P-201
ENST00000364654
107 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-15-201
ENST00000364809
81 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-1-201
ENST00000364961
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-26-201
ENST00000365067
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-10-201
ENST00000365073
81 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-43-201
ENST00000365503
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-36-201
ENST00000365629
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
MIR520H-201
ENST00000385126
88 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
MT-TD-201
ENST00000387419
68 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
Y_RNA.587-201
ENST00000391210
103 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
MIR1252-201
ENST00000408861
65 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
LINC00345-201
ENST00000443679
285 nt
TSL 5
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD77.4-201
ENST00000516158
81 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
MIR5692C2-201
ENST00000577959
77 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
MIR4804-201
ENST00000581683
73 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
AC020891.4-201
ENST00000605745
93 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
SNORD115-40-201
ENST00000606510
82 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
MIR8055-201
ENST00000610739
97 nt
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
AC135050.6-201
ENST00000610813
528 nt
TSL 3
BASIC
0.34
□□□□□ -2.36
CDH4
P55283
snoU2_19.2-201
ENST00000363024
80 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
Y_RNA.241-201
ENST00000364470
117 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
Y_RNA.486-201
ENST00000384398
107 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
MIR520F-201
ENST00000384824
87 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
MIR548A2-201
ENST00000384956
97 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
RNU6-913P-201
ENST00000390913
95 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
AC023449.1-201
ENST00000454464
154 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
RNU7-56P-201
ENST00000458744
62 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
AC107297.1-201
ENST00000459991
176 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
RNU6-977P-201
ENST00000516411
103 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
AC113192.4-201
ENST00000534666
547 nt
TSL 4
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
MIR4771-2-201
ENST00000577758
74 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
MIR4771-1-201
ENST00000582617
74 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
AP000942.4-201
ENST00000604811
241 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
AC134878.1-201
ENST00000619901
243 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
AC010487.4-201
ENST00000637027
61 nt
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
CEP290-203
ENST00000547691
5968 nt
TSL 1 (best)
BASIC
0.33
□□□□□ -2.36
CDH4
P55283
MIR18A-201
ENST00000362310
71 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
SNORD115-28-201
ENST00000363931
81 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
RNU6-290P-201
ENST00000365212
101 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
Y_RNA.541-201
ENST00000384640
113 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
MIR518F-201
ENST00000384973
87 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
AC087499.4-201
ENST00000448505
178 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
RNU7-67P-201
ENST00000459003
62 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
MTCO2P24-201
ENST00000515611
426 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
SNORA18.4-201
ENST00000516440
124 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
RNU6-958P-201
ENST00000516995
106 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
AC007991.2-201
ENST00000520185
102 nt
TSL 5
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
AC084365.1-201
ENST00000552470
310 nt
TSL 3
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
MIR4676-201
ENST00000583078
72 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
AL355297.3-201
ENST00000604082
446 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
MIR6740-201
ENST00000618268
113 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
NPPA-AS1_2.1-201
ENST00000618496
149 nt
BASIC
0.32
□□□□□ -2.36
CDH4
P55283
Y_RNA.14-201
ENST00000362415
103 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
Y_RNA.37-201
ENST00000362606
108 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
Y_RNA.217-201
ENST00000364214
105 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
RNU6-474P-201
ENST00000384243
107 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
Y_RNA.509-201
ENST00000384506
99 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MIR215-201
ENST00000384858
110 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MIR193B-201
ENST00000384907
83 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MIR7-2-201
ENST00000384970
110 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
SNORA40.5-201
ENST00000391061
128 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
ELOCP20-201
ENST00000422460
345 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
RNU7-73P-201
ENST00000458743
63 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
RNU7-62P-201
ENST00000458856
62 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
Y_RNA.641-201
ENST00000459414
105 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
RNU2-31P-201
ENST00000516954
155 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MIR4724-201
ENST00000579485
89 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MIR3612-201
ENST00000579753
87 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
Z97988.1-201
ENST00000637697
135 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MTND4P29-201
ENST00000503122
1372 nt
BASIC
0.31
□□□□□ -2.36
CDH4
P55283
MIR367-201
ENST00000362299
68 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
Y_RNA.28-201
ENST00000362554
111 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
Y_RNA.214-201
ENST00000364201
112 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
RNU6-326P-201
ENST00000365480
107 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
Y_RNA.394-201
ENST00000383942
103 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
RNU6-662P-201
ENST00000384253
104 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
RNA5SP134-201
ENST00000516492
96 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
MIR4662B-201
ENST00000579498
81 nt
BASIC
0.3
□□□□□ -2.36
CDH4
P55283
AL162730.1-201
ENST00000605734
292 nt
BASIC
0.3
□□□□□ -2.36
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Retrieved 100 of 98,524 protein–RNA pairs in 195.3 ms