Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
COL4A4P53420 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.21□□□□□ -2.22
COL4A4P53420 AC245047.4-201ENST00000433189 144 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 MTCO1P44-201ENST00000441935 243 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 RNU6-498P-201ENST00000459468 107 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 RNU6-772P-201ENST00000516042 105 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 SNORA72.7-201ENST00000516349 94 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 RNU6-126P-201ENST00000516685 103 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 AC027419.1-201ENST00000522976 328 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 MIR4753-201ENST00000585119 83 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 AL929325.1-201ENST00000603096 117 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 AC120024.3-201ENST00000603167 156 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 AL020996.3-201ENST00000606617 222 ntBASIC1.21□□□□□ -2.22
COL4A4P53420 AC008555.8-201ENST00000623602 2168 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 Y_RNA.35-201ENST00000362601 101 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 MIR548A3-201ENST00000385297 97 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 MIR1285-1-201ENST00000408593 84 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU2-49P-201ENST00000410666 184 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU6-1328P-201ENST00000410938 106 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU6-57P-201ENST00000411348 103 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 SNORD11-201ENST00000459124 84 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU6-693P-201ENST00000516134 107 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 MIR5582-201ENST00000579697 68 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.2□□□□□ -2.22
COL4A4P53420 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.2□□□□□ -2.22
COL4A4P53420 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
COL4A4P53420 SNORA68.1-201ENST00000364537 132 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 SNORA72-201ENST00000384339 132 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 MIR873-201ENST00000401120 77 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU2-70P-201ENST00000410718 179 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 AC245102.2-201ENST00000448956 180 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RPS27P22-201ENST00000478056 241 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 AC097462.1-201ENST00000514125 324 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 SNORD77.4-201ENST00000516158 81 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU6-1146P-201ENST00000516282 102 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU6-504P-201ENST00000516568 104 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 AC090142.3-201ENST00000519012 385 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC1.2□□□□□ -2.22
COL4A4P53420 Y_RNA.757-201ENST00000578934 114 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 AC097639.2-201ENST00000603159 172 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 AC025166.1-201ENST00000612411 163 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 5S_rRNA.13-201ENST00000622298 123 ntBASIC1.2□□□□□ -2.22
COL4A4P53420 RNU6-716P-201ENST00000365621 103 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 Y_RNA.486-201ENST00000384398 107 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 RNU6-35P-201ENST00000384530 107 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 MIR95-201ENST00000385072 81 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 AL161788.1-201ENST00000441805 169 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 AC016925.1-201ENST00000458303 298 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 Y_RNA.651-201ENST00000459380 103 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 MRPS36P2-201ENST00000512569 299 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 Y_RNA.677-201ENST00000516401 85 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 MIR3616-201ENST00000584070 92 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 AL359075.3-201ENST00000613288 217 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 U6.73-201ENST00000619194 103 ntBASIC1.19□□□□□ -2.22
COL4A4P53420 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.19□□□□□ -2.22
COL4A4P53420 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.18□□□□□ -2.22
COL4A4P53420 MIR367-201ENST00000362299 68 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 Y_RNA.91-201ENST00000363042 107 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 Y_RNA.369-201ENST00000365568 117 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 SNORA1-201ENST00000384107 130 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNU6-106P-201ENST00000384405 107 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 Y_RNA.528-201ENST00000384575 108 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNU6-440P-201ENST00000390882 105 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNA5SP467-201ENST00000391274 118 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNA5SP127-201ENST00000411051 133 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 AC060773.1-201ENST00000421698 310 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 AL158147.1-201ENST00000443970 75 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.18□□□□□ -2.22
COL4A4P53420 RNA5SP236-201ENST00000516169 116 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNU6-168P-201ENST00000516189 101 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNU6-1061P-201ENST00000516530 99 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 Y_RNA.690-201ENST00000516603 95 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNU6-844P-201ENST00000517175 102 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 AL160236.1-201ENST00000556317 195 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 MIR4438-201ENST00000585271 93 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 AL365205.2-201ENST00000594586 68 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 MIR5739-201ENST00000619803 80 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 MIR924-201ENST00000638017 53 ntBASIC1.18□□□□□ -2.22
COL4A4P53420 RNU6-1209P-201ENST00000363655 107 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 SNORD114-6-201ENST00000364393 72 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 Y_RNA.309-201ENST00000365046 111 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 Y_RNA.332-201ENST00000365271 113 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU6-1138P-201ENST00000365359 106 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU6-546P-201ENST00000383991 107 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 SNORD116-21-201ENST00000384507 92 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU6-1072P-201ENST00000384703 107 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU6-443P-201ENST00000384780 107 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 MIR513A1-201ENST00000385138 129 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 MIRLET7F2-201ENST00000385277 83 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RPS26P55-201ENST00000471178 356 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNA5SP112-201ENST00000515937 99 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU6-412P-201ENST00000516434 106 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU6-965P-201ENST00000516721 96 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 AC018630.3-201ENST00000542637 96 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 JPX_2.1-201ENST00000614161 69 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 MTND5P18-201ENST00000445624 1801 ntBASIC1.17□□□□□ -2.22
COL4A4P53420 RNU1-96P-201ENST00000364163 162 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU6-978P-201ENST00000364371 103 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU6-1107P-201ENST00000364817 104 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 110 ms