Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MTND3P2-201ENST00000438452 342 ntBASIC1.3□□□□□ -2.2
CTCFP49711 AC023449.1-201ENST00000454464 154 ntBASIC1.3□□□□□ -2.2
CTCFP49711 RN7SKP179-201ENST00000516126 217 ntBASIC1.3□□□□□ -2.2
CTCFP49711 RN7SKP164-201ENST00000516138 266 ntBASIC1.3□□□□□ -2.2
CTCFP49711 MIR6513-201ENST00000621188 64 ntBASIC1.3□□□□□ -2.2
CTCFP49711 RNU1-124P-201ENST00000363861 145 ntBASIC1.29□□□□□ -2.2
CTCFP49711 Y_RNA.229-201ENST00000364347 113 ntBASIC1.29□□□□□ -2.2
CTCFP49711 Y_RNA.304-201ENST00000365011 112 ntBASIC1.29□□□□□ -2.2
CTCFP49711 AL133373.1-201ENST00000497098 94 ntBASIC1.29□□□□□ -2.2
CTCFP49711 AC090821.2-201ENST00000523552 176 ntBASIC1.29□□□□□ -2.2
CTCFP49711 MIR4764-201ENST00000580680 88 ntBASIC1.29□□□□□ -2.2
CTCFP49711 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.29□□□□□ -2.2
CTCFP49711 AL391903.3-201ENST00000612158 163 ntBASIC1.29□□□□□ -2.2
CTCFP49711 Pinc.1-201ENST00000616452 154 ntBASIC1.29□□□□□ -2.2
CTCFP49711 Y_RNA.277-201ENST00000364754 102 ntBASIC1.28□□□□□ -2.2
CTCFP49711 Y_RNA.363-201ENST00000365529 113 ntBASIC1.28□□□□□ -2.2
CTCFP49711 MIR520C-201ENST00000385005 87 ntBASIC1.28□□□□□ -2.2
CTCFP49711 MIR1302-3-201ENST00000408128 138 ntBASIC1.28□□□□□ -2.2
CTCFP49711 RNU7-41P-201ENST00000515917 61 ntBASIC1.28□□□□□ -2.2
CTCFP49711 RNU7-43P-201ENST00000516554 64 ntBASIC1.28□□□□□ -2.2
CTCFP49711 AC011921.3-201ENST00000605540 361 ntBASIC1.28□□□□□ -2.2
CTCFP49711 AL022345.2-201ENST00000606307 135 ntBASIC1.28□□□□□ -2.2
CTCFP49711 MIR6857-201ENST00000613267 93 ntBASIC1.28□□□□□ -2.2
CTCFP49711 Y_RNA.274-201ENST00000364714 101 ntBASIC1.27□□□□□ -2.21
CTCFP49711 SNORA25-201ENST00000384384 134 ntBASIC1.27□□□□□ -2.21
CTCFP49711 SNORD28B-201ENST00000390993 75 ntBASIC1.27□□□□□ -2.21
CTCFP49711 MIR548H3-201ENST00000408771 118 ntBASIC1.27□□□□□ -2.21
CTCFP49711 SNORA31.4-201ENST00000516049 129 ntBASIC1.27□□□□□ -2.21
CTCFP49711 Y_RNA.679-201ENST00000516416 91 ntBASIC1.27□□□□□ -2.21
CTCFP49711 MIR548AR-201ENST00000582191 57 ntBASIC1.27□□□□□ -2.21
CTCFP49711 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.27□□□□□ -2.21
CTCFP49711 AC015726.2-201ENST00000620112 122 ntBASIC1.27□□□□□ -2.21
CTCFP49711 AL365265.1-201ENST00000621045 234 ntBASIC1.27□□□□□ -2.21
CTCFP49711 MIR330-201ENST00000362196 94 ntBASIC1.26□□□□□ -2.21
CTCFP49711 Y_RNA.54-201ENST00000362766 105 ntBASIC1.26□□□□□ -2.21
CTCFP49711 Y_RNA.76-201ENST00000362931 109 ntBASIC1.26□□□□□ -2.21
CTCFP49711 snoU2_19.4-201ENST00000364329 80 ntBASIC1.26□□□□□ -2.21
CTCFP49711 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
CTCFP49711 RNU6-910P-201ENST00000390844 107 ntBASIC1.26□□□□□ -2.21
CTCFP49711 Y_RNA.587-201ENST00000391210 103 ntBASIC1.26□□□□□ -2.21
CTCFP49711 MIR936-201ENST00000401264 98 ntBASIC1.26□□□□□ -2.21
CTCFP49711 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.26□□□□□ -2.21
CTCFP49711 MTND1P19-201ENST00000511780 315 ntBASIC1.26□□□□□ -2.21
CTCFP49711 RNU4-57P-201ENST00000515980 135 ntBASIC1.26□□□□□ -2.21
CTCFP49711 HSPE1P19-201ENST00000603327 295 ntBASIC1.26□□□□□ -2.21
CTCFP49711 PRELID3BP2-201ENST00000605362 201 ntBASIC1.26□□□□□ -2.21
CTCFP49711 AC027335.2-201ENST00000624030 375 ntBASIC1.26□□□□□ -2.21
CTCFP49711 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.26□□□□□ -2.21
CTCFP49711 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.26□□□□□ -2.21
CTCFP49711 RNU6-653P-201ENST00000363074 106 ntBASIC1.25□□□□□ -2.21
CTCFP49711 Y_RNA.416-201ENST00000384014 113 ntBASIC1.25□□□□□ -2.21
CTCFP49711 Y_RNA.486-201ENST00000384398 107 ntBASIC1.25□□□□□ -2.21
CTCFP49711 U8.17-201ENST00000391292 132 ntBASIC1.25□□□□□ -2.21
CTCFP49711 MIR1285-1-201ENST00000408593 84 ntBASIC1.25□□□□□ -2.21
CTCFP49711 RNU7-25P-201ENST00000516544 62 ntBASIC1.25□□□□□ -2.21
CTCFP49711 RNA5SP404-201ENST00000517118 132 ntBASIC1.25□□□□□ -2.21
CTCFP49711 SNORA70.22-201ENST00000517160 124 ntBASIC1.25□□□□□ -2.21
CTCFP49711 AP003716.2-201ENST00000528260 108 ntBASIC1.25□□□□□ -2.21
CTCFP49711 MIR4662B-201ENST00000579498 81 ntBASIC1.25□□□□□ -2.21
CTCFP49711 MIR3973-201ENST00000579824 107 ntBASIC1.25□□□□□ -2.21
CTCFP49711 MIR4714-201ENST00000580728 77 ntBASIC1.25□□□□□ -2.21
CTCFP49711 AL442067.1-201ENST00000613261 223 ntBASIC1.25□□□□□ -2.21
CTCFP49711 AL391516.1-201ENST00000554380 2449 ntBASIC1.25□□□□□ -2.21
CTCFP49711 Y_RNA.547-201ENST00000384654 119 ntBASIC1.24□□□□□ -2.21
CTCFP49711 SNORD12-201ENST00000391002 90 ntBASIC1.24□□□□□ -2.21
CTCFP49711 MIR548O-201ENST00000408583 114 ntBASIC1.24□□□□□ -2.21
CTCFP49711 RPS26P48-201ENST00000491713 339 ntBASIC1.24□□□□□ -2.21
CTCFP49711 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.24□□□□□ -2.21
CTCFP49711 SCARNA8-201ENST00000515924 131 ntBASIC1.24□□□□□ -2.21
CTCFP49711 SNORD79.1-201ENST00000516069 84 ntBASIC1.24□□□□□ -2.21
CTCFP49711 Y_RNA.666-201ENST00000516187 112 ntBASIC1.24□□□□□ -2.21
CTCFP49711 MIR4503-201ENST00000582187 83 ntBASIC1.24□□□□□ -2.21
CTCFP49711 BX284668.6-201ENST00000606899 438 ntBASIC1.24□□□□□ -2.21
CTCFP49711 U4.1-201ENST00000620349 87 ntBASIC1.24□□□□□ -2.21
CTCFP49711 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.23□□□□□ -2.21
CTCFP49711 SNORD58.1-201ENST00000391313 66 ntBASIC1.23□□□□□ -2.21
CTCFP49711 RNU7-181P-201ENST00000517234 74 ntBASIC1.23□□□□□ -2.21
CTCFP49711 AC062037.2-201ENST00000610137 73 ntBASIC1.23□□□□□ -2.21
CTCFP49711 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.22□□□□□ -2.21
CTCFP49711 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.22□□□□□ -2.21
CTCFP49711 RNA5SP48-201ENST00000363969 126 ntBASIC1.22□□□□□ -2.21
CTCFP49711 Y_RNA.292-201ENST00000364904 97 ntBASIC1.22□□□□□ -2.21
CTCFP49711 Y_RNA.350-201ENST00000365409 98 ntBASIC1.22□□□□□ -2.21
CTCFP49711 RNU6-196P-201ENST00000384315 107 ntBASIC1.22□□□□□ -2.21
CTCFP49711 Y_RNA.539-201ENST00000384635 107 ntBASIC1.22□□□□□ -2.21
CTCFP49711 MIR19B1-201ENST00000384829 87 ntBASIC1.22□□□□□ -2.21
CTCFP49711 MIR532-201ENST00000385025 91 ntBASIC1.22□□□□□ -2.21
CTCFP49711 MIR616-201ENST00000385293 97 ntBASIC1.22□□□□□ -2.21
CTCFP49711 MT-TT-201ENST00000387460 66 ntBASIC1.22□□□□□ -2.21
CTCFP49711 RNU6-381P-201ENST00000391259 108 ntBASIC1.22□□□□□ -2.21
CTCFP49711 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.22□□□□□ -2.21
CTCFP49711 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.22□□□□□ -2.21
CTCFP49711 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.22□□□□□ -2.21
CTCFP49711 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.22□□□□□ -2.21
CTCFP49711 RNU6-453P-201ENST00000516819 85 ntBASIC1.22□□□□□ -2.21
CTCFP49711 AC007751.1-201ENST00000529260 376 ntBASIC1.22□□□□□ -2.21
CTCFP49711 AC012676.2-201ENST00000619258 186 ntBASIC1.22□□□□□ -2.21
CTCFP49711 Y_RNA.20-201ENST00000362479 113 ntBASIC1.21□□□□□ -2.22
CTCFP49711 RNA5SP264-201ENST00000363115 107 ntBASIC1.21□□□□□ -2.22
CTCFP49711 SNORD27-201ENST00000363981 72 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms