Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 MIR518F-201ENST00000384973 87 ntBASIC1.12□□□□□ -2.23
MSH2P43246 Y_RNA.622-201ENST00000411091 108 ntBASIC1.12□□□□□ -2.23
MSH2P43246 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH2P43246 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.12□□□□□ -2.23
MSH2P43246 AC005840.1-201ENST00000498412 377 ntBASIC1.12□□□□□ -2.23
MSH2P43246 RNU2-13P-201ENST00000515909 113 ntBASIC1.12□□□□□ -2.23
MSH2P43246 RNY3P16-201ENST00000516338 101 ntBASIC1.12□□□□□ -2.23
MSH2P43246 RNA5SP153-201ENST00000516498 76 ntBASIC1.12□□□□□ -2.23
MSH2P43246 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.12□□□□□ -2.23
MSH2P43246 AC004817.2-201ENST00000561794 651 ntBASIC1.12□□□□□ -2.23
MSH2P43246 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.12□□□□□ -2.23
MSH2P43246 AC091895.1-201ENST00000624494 256 ntBASIC1.12□□□□□ -2.23
MSH2P43246 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.11□□□□□ -2.23
MSH2P43246 MIR103A2-201ENST00000362154 78 ntBASIC1.11□□□□□ -2.23
MSH2P43246 Y_RNA.66-201ENST00000362862 102 ntBASIC1.11□□□□□ -2.23
MSH2P43246 RNU6-888P-201ENST00000363010 101 ntBASIC1.11□□□□□ -2.23
MSH2P43246 Y_RNA.91-201ENST00000363042 107 ntBASIC1.11□□□□□ -2.23
MSH2P43246 RNU6-103P-201ENST00000363686 107 ntBASIC1.11□□□□□ -2.23
MSH2P43246 SNORD115-28-201ENST00000363931 81 ntBASIC1.11□□□□□ -2.23
MSH2P43246 Y_RNA.199-201ENST00000364014 102 ntBASIC1.11□□□□□ -2.23
MSH2P43246 SNORA20.1-201ENST00000364790 130 ntBASIC1.11□□□□□ -2.23
MSH2P43246 Y_RNA.634-201ENST00000364811 113 ntBASIC1.11□□□□□ -2.23
MSH2P43246 SNORA22-201ENST00000383907 134 ntBASIC1.11□□□□□ -2.23
MSH2P43246 SNORA22C-201ENST00000384614 134 ntBASIC1.11□□□□□ -2.23
MSH2P43246 Y_RNA.537-201ENST00000384626 109 ntBASIC1.11□□□□□ -2.23
MSH2P43246 MIR19B1-201ENST00000384829 87 ntBASIC1.11□□□□□ -2.23
MSH2P43246 SNORA75.2-201ENST00000391138 150 ntBASIC1.11□□□□□ -2.23
MSH2P43246 SNORA75.3-201ENST00000391231 150 ntBASIC1.11□□□□□ -2.23
MSH2P43246 RNU2-70P-201ENST00000410718 179 ntBASIC1.11□□□□□ -2.23
MSH2P43246 MRPL35P3-201ENST00000421557 364 ntBASIC1.11□□□□□ -2.23
MSH2P43246 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.11□□□□□ -2.23
MSH2P43246 UBL5P1-201ENST00000507979 193 ntBASIC1.11□□□□□ -2.23
MSH2P43246 RNU6-504P-201ENST00000516568 104 ntBASIC1.11□□□□□ -2.23
MSH2P43246 RNU6-1270P-201ENST00000517128 108 ntBASIC1.11□□□□□ -2.23
MSH2P43246 AC109810.1-201ENST00000534066 224 ntBASIC1.11□□□□□ -2.23
MSH2P43246 AC012676.2-201ENST00000619258 186 ntBASIC1.11□□□□□ -2.23
MSH2P43246 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.11□□□□□ -2.23
MSH2P43246 SNORD45.3-201ENST00000363836 72 ntBASIC1.1□□□□□ -2.23
MSH2P43246 Y_RNA.308-201ENST00000365043 101 ntBASIC1.1□□□□□ -2.23
MSH2P43246 SNORA51.10-201ENST00000384418 136 ntBASIC1.1□□□□□ -2.23
MSH2P43246 MIR1185-1-201ENST00000408598 86 ntBASIC1.1□□□□□ -2.23
MSH2P43246 RNU6-321P-201ENST00000410912 106 ntBASIC1.1□□□□□ -2.23
MSH2P43246 RNU6-847P-201ENST00000411115 108 ntBASIC1.1□□□□□ -2.23
MSH2P43246 Y_RNA.626-201ENST00000411288 95 ntBASIC1.1□□□□□ -2.23
MSH2P43246 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.1□□□□□ -2.23
MSH2P43246 AC002429.1-201ENST00000437672 148 ntBASIC1.1□□□□□ -2.23
MSH2P43246 AC087499.4-201ENST00000448505 178 ntBASIC1.1□□□□□ -2.23
MSH2P43246 RNU7-21P-201ENST00000459430 62 ntBASIC1.1□□□□□ -2.23
MSH2P43246 RNU4-71P-201ENST00000516258 113 ntBASIC1.1□□□□□ -2.23
MSH2P43246 RNU6-111P-201ENST00000517179 105 ntBASIC1.1□□□□□ -2.23
MSH2P43246 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.1□□□□□ -2.23
MSH2P43246 AC097639.2-201ENST00000603159 172 ntBASIC1.1□□□□□ -2.23
MSH2P43246 HSPE1P19-201ENST00000603327 295 ntBASIC1.1□□□□□ -2.23
MSH2P43246 AC103810.9-201ENST00000606688 112 ntBASIC1.1□□□□□ -2.23
MSH2P43246 MIR4791-201ENST00000607666 84 ntBASIC1.1□□□□□ -2.23
MSH2P43246 Y_RNA.37-201ENST00000362606 108 ntBASIC1.09□□□□□ -2.23
MSH2P43246 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.09□□□□□ -2.23
MSH2P43246 RNU6-561P-201ENST00000516222 102 ntBASIC1.09□□□□□ -2.23
MSH2P43246 AL391516.1-201ENST00000554380 2449 ntBASIC1.09□□□□□ -2.24
MSH2P43246 SNORD115-34-201ENST00000362441 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-12-201ENST00000362583 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-29-201ENST00000362834 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-9-201ENST00000362912 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-21-201ENST00000362963 81 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-14-201ENST00000363090 81 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-13-201ENST00000363358 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-41-201ENST00000363608 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-11-201ENST00000363616 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-5-201ENST00000363633 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-39-201ENST00000363694 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-4-201ENST00000363810 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-16-201ENST00000363887 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-6-201ENST00000363942 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 RNY1-201ENST00000364228 113 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-42-201ENST00000364273 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 Y_RNA.241-201ENST00000364470 117 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-15-201ENST00000364809 81 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-1-201ENST00000364961 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-26-201ENST00000365067 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-10-201ENST00000365073 81 ntBASIC1.08□□□□□ -2.24
MSH2P43246 RNU6-728P-201ENST00000365375 104 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-43-201ENST00000365503 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-36-201ENST00000365629 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 RNU6-493P-201ENST00000391321 108 ntBASIC1.08□□□□□ -2.24
MSH2P43246 MIR1302-7-201ENST00000408841 72 ntBASIC1.08□□□□□ -2.24
MSH2P43246 RNU6-938P-201ENST00000411285 103 ntBASIC1.08□□□□□ -2.24
MSH2P43246 AL392103.1-201ENST00000447000 198 ntBASIC1.08□□□□□ -2.24
MSH2P43246 AC107297.1-201ENST00000459991 176 ntBASIC1.08□□□□□ -2.24
MSH2P43246 MIR4744-201ENST00000581563 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 SNORD115-40-201ENST00000606510 82 ntBASIC1.08□□□□□ -2.24
MSH2P43246 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.08□□□□□ -2.24
MSH2P43246 AC243994.1-201ENST00000618627 109 ntBASIC1.08□□□□□ -2.24
MSH2P43246 AC008163.1-202ENST00000636004 2889 ntBASIC1.08□□□□□ -2.24
MSH2P43246 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.08□□□□□ -2.24
MSH2P43246 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
MSH2P43246 RNU6-392P-201ENST00000364926 101 ntBASIC1.07□□□□□ -2.24
MSH2P43246 Y_RNA.494-201ENST00000384432 111 ntBASIC1.07□□□□□ -2.24
MSH2P43246 snosnR66.1-201ENST00000391095 99 ntBASIC1.07□□□□□ -2.24
MSH2P43246 RNU7-90P-201ENST00000459216 62 ntBASIC1.07□□□□□ -2.24
MSH2P43246 SNORD124-201ENST00000459577 104 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms