Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC007751.1-201ENST00000529260 376 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 MIR4662B-201ENST00000579498 81 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 FTX_2.1-201ENST00000618816 94 ntBASIC1.22□□□□□ -2.21
HNF4AP41235 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.21□□□□□ -2.22
HNF4AP41235 Y_RNA.66-201ENST00000362862 102 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 SNORD61-201ENST00000384252 73 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 MIR802-201ENST00000390235 94 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 RNU2-70P-201ENST00000410718 179 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 RNU5E-9P-201ENST00000411164 104 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 SEPT7P4-201ENST00000437076 306 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 RN7SKP179-201ENST00000516126 217 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 RNA5SP153-201ENST00000516498 76 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 RNU6-197P-201ENST00000516680 100 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 RNU6-365P-201ENST00000517113 106 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 FAM106DP-201ENST00000586416 501 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 AL353770.2-201ENST00000620024 78 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 AL442644.1-201ENST00000454390 3105 ntBASIC1.21□□□□□ -2.22
HNF4AP41235 Y_RNA.23-201ENST00000362496 106 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 RNU6-312P-201ENST00000364629 107 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 Y_RNA.547-201ENST00000384654 119 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 MIR548A2-201ENST00000384956 97 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 MIR452-201ENST00000385020 85 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 MIR653-201ENST00000385279 96 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 PCNPP3-201ENST00000393579 471 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 Y_RNA.662-201ENST00000516028 97 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 SNORA31.4-201ENST00000516049 129 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 RNU7-25P-201ENST00000516544 62 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 RNU6-922P-201ENST00000516753 99 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.2□□□□□ -2.22
HNF4AP41235 MIR4431-201ENST00000579990 94 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 AC097639.2-201ENST00000603159 172 ntBASIC1.2□□□□□ -2.22
HNF4AP41235 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HNF4AP41235 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.19□□□□□ -2.22
HNF4AP41235 RNU1-124P-201ENST00000363861 145 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 SNORA2.2-201ENST00000365473 135 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 RNU6-643P-201ENST00000384018 107 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 RNU6-886P-201ENST00000384319 105 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 RPS29P29-201ENST00000456396 171 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 OR2A41P-201ENST00000473586 105 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 RPS23P4-201ENST00000487908 423 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 RNU6-693P-201ENST00000516134 107 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 RNU6-830P-201ENST00000516353 107 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 SNORA70.22-201ENST00000517160 124 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 GHRLOS.1-201ENST00000610995 70 ntBASIC1.19□□□□□ -2.22
HNF4AP41235 Y_RNA.242-201ENST00000364473 110 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 SNORA1-201ENST00000384107 130 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 Y_RNA.441-201ENST00000384123 112 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 SNORD38C-201ENST00000384381 69 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 MIR518F-201ENST00000384973 87 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 MIR136-201ENST00000385207 82 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 MIR548O-201ENST00000408583 114 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 RNU6-1135P-201ENST00000411083 103 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 AC006461.1-201ENST00000412637 326 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 RNU6-504P-201ENST00000516568 104 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 RNU6-1270P-201ENST00000517128 108 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 AC090821.2-201ENST00000523552 176 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 AC090049.2-201ENST00000550377 109 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 MIR378D2-201ENST00000580636 98 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 AC098479.1-201ENST00000609225 154 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 AC015726.2-201ENST00000620112 122 ntBASIC1.18□□□□□ -2.22
HNF4AP41235 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.17□□□□□ -2.22
HNF4AP41235 RNU6-888P-201ENST00000363010 101 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 RNU6-978P-201ENST00000364371 103 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 Y_RNA.270-201ENST00000364693 104 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 SNORD24-201ENST00000383884 75 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 SNORD41-201ENST00000386967 70 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 SNORA26-201ENST00000391286 122 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 SNORA79-201ENST00000408376 140 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 RNU4-57P-201ENST00000515980 135 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 RNU6-322P-201ENST00000516010 103 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 RNU6-126P-201ENST00000516685 103 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 SNORA18.7-201ENST00000516910 131 ntBASIC1.17□□□□□ -2.22
HNF4AP41235 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.17□□□□□ -2.22
HNF4AP41235 RNU4-84P-201ENST00000364200 139 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 Y_RNA.555-201ENST00000384673 110 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 SNORD28B-201ENST00000390993 75 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 U8.17-201ENST00000391292 132 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 RNU6-938P-201ENST00000411285 103 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.16□□□□□ -2.22
HNF4AP41235 AF228730.3-201ENST00000436691 102 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 SNORD123-201ENST00000459473 70 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.16□□□□□ -2.22
HNF4AP41235 SNORA31.2-201ENST00000516019 134 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 RNU7-181P-201ENST00000517234 74 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 MIR548AR-201ENST00000582191 57 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 HSPE1P19-201ENST00000603327 295 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 AC012676.2-201ENST00000619258 186 ntBASIC1.16□□□□□ -2.22
HNF4AP41235 Y_RNA.357-201ENST00000365487 109 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 RNU6-1336P-201ENST00000383886 109 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 Y_RNA.494-201ENST00000384432 111 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 AL451046.2-201ENST00000403074 277 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 MIR548I3-201ENST00000408378 149 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 MIR548I1-201ENST00000408810 149 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 RNU6-394P-201ENST00000410735 107 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 AL603825.1-201ENST00000438481 80 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 RNU7-121P-201ENST00000516604 62 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 SNORA74.3-201ENST00000517108 154 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 snoU13.31-201ENST00000607291 104 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 AC104465.1-201ENST00000611365 139 ntBASIC1.15□□□□□ -2.23
HNF4AP41235 Y_RNA.37-201ENST00000362606 108 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 8.6 ms