Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU7-164P-201ENST00000459221 62 ntBASIC2.08□□□□□ -2.08
MSX2P35548 RPS29P24-201ENST00000486345 171 ntBASIC2.08□□□□□ -2.08
MSX2P35548 AC234781.5-201ENST00000508429 271 ntBASIC2.08□□□□□ -2.08
MSX2P35548 RNU2-35P-201ENST00000516446 142 ntBASIC2.08□□□□□ -2.08
MSX2P35548 SCARNA16.3-201ENST00000516595 184 ntBASIC2.08□□□□□ -2.08
MSX2P35548 Y_RNA.694-201ENST00000516677 117 ntBASIC2.08□□□□□ -2.08
MSX2P35548 RNA5SP437-201ENST00000517249 129 ntBASIC2.08□□□□□ -2.08
MSX2P35548 SNORD53-201ENST00000579969 78 ntBASIC2.08□□□□□ -2.08
MSX2P35548 MIR5007-201ENST00000583098 95 ntBASIC2.08□□□□□ -2.08
MSX2P35548 MIR4305-201ENST00000583252 102 ntBASIC2.08□□□□□ -2.08
MSX2P35548 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.08□□□□□ -2.08
MSX2P35548 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-34-201ENST00000362441 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 RNU6-766P-201ENST00000362478 107 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-12-201ENST00000362583 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-29-201ENST00000362834 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-9-201ENST00000362912 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-21-201ENST00000362963 81 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-14-201ENST00000363090 81 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-13-201ENST00000363358 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORA63.5-201ENST00000363548 123 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-41-201ENST00000363608 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-11-201ENST00000363616 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-5-201ENST00000363633 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 RNY4P6-201ENST00000363667 96 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-39-201ENST00000363694 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-4-201ENST00000363810 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-16-201ENST00000363887 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-6-201ENST00000363942 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-42-201ENST00000364273 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 Y_RNA.241-201ENST00000364470 117 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-15-201ENST00000364809 81 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-1-201ENST00000364961 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-26-201ENST00000365067 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-10-201ENST00000365073 81 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-43-201ENST00000365503 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-36-201ENST00000365629 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 RNU6-1014P-201ENST00000383940 103 ntBASIC2.07□□□□□ -2.08
MSX2P35548 RNU6-950P-201ENST00000384651 107 ntBASIC2.07□□□□□ -2.08
MSX2P35548 SNORA67.4-201ENST00000384688 142 ntBASIC2.07□□□□□ -2.08
MSX2P35548 MIR17-201ENST00000385012 84 ntBASIC2.07□□□□□ -2.08
MSX2P35548 RNA5SP501-201ENST00000410990 112 ntBASIC2.07□□□□□ -2.08
MSX2P35548 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.07□□□□□ -2.08
MSX2P35548 AC079804.2-201ENST00000490376 200 ntBASIC2.07□□□□□ -2.08
MSX2P35548 RNU6-998P-201ENST00000515894 101 ntBASIC2.07□□□□□ -2.08
MSX2P35548 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.07□□□□□ -2.08
MSX2P35548 AC022523.2-201ENST00000561045 150 ntBASIC2.07□□□□□ -2.08
MSX2P35548 MIR3683-201ENST00000580847 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.07□□□□□ -2.08
MSX2P35548 SNORD115-40-201ENST00000606510 82 ntBASIC2.07□□□□□ -2.08
MSX2P35548 AL590808.1-201ENST00000618696 141 ntBASIC2.07□□□□□ -2.08
MSX2P35548 U1.36-201ENST00000620684 176 ntBASIC2.07□□□□□ -2.08
MSX2P35548 MIR4679-1-201ENST00000637619 75 ntBASIC2.07□□□□□ -2.08
MSX2P35548 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
MSX2P35548 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.06□□□□□ -2.08
MSX2P35548 RNU6-414P-201ENST00000363705 104 ntBASIC2.06□□□□□ -2.08
MSX2P35548 SNORA70B-201ENST00000384210 135 ntBASIC2.06□□□□□ -2.08
MSX2P35548 RNU6-296P-201ENST00000384608 107 ntBASIC2.06□□□□□ -2.08
MSX2P35548 MIR221-201ENST00000385135 110 ntBASIC2.06□□□□□ -2.08
MSX2P35548 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.06□□□□□ -2.08
MSX2P35548 RPL39P34-201ENST00000477141 156 ntBASIC2.06□□□□□ -2.08
MSX2P35548 MIR514B-201ENST00000516774 80 ntBASIC2.06□□□□□ -2.08
MSX2P35548 RNU7-181P-201ENST00000517234 74 ntBASIC2.06□□□□□ -2.08
MSX2P35548 RNU6-537P-201ENST00000517277 103 ntBASIC2.06□□□□□ -2.08
MSX2P35548 AC090821.2-201ENST00000523552 176 ntBASIC2.06□□□□□ -2.08
MSX2P35548 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.06□□□□□ -2.08
MSX2P35548 AL589743.1-201ENST00000551932 2712 ntBASIC2.06□□□□□ -2.08
MSX2P35548 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.05□□□□□ -2.08
MSX2P35548 Y_RNA.49-201ENST00000362714 112 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RNU6-112P-201ENST00000363599 104 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RNU4-16P-201ENST00000364737 141 ntBASIC2.05□□□□□ -2.08
MSX2P35548 Y_RNA.344-201ENST00000365381 112 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RNU6-756P-201ENST00000383997 107 ntBASIC2.05□□□□□ -2.08
MSX2P35548 MIR520A-201ENST00000384862 85 ntBASIC2.05□□□□□ -2.08
MSX2P35548 SNX2P2-201ENST00000424553 323 ntBASIC2.05□□□□□ -2.08
MSX2P35548 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.05□□□□□ -2.08
MSX2P35548 RNU7-96P-201ENST00000459535 64 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RPL23AP63-201ENST00000498752 471 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RNU7-12P-201ENST00000516030 62 ntBASIC2.05□□□□□ -2.08
MSX2P35548 Y_RNA.677-201ENST00000516401 85 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RNU1-40P-201ENST00000516816 164 ntBASIC2.05□□□□□ -2.08
MSX2P35548 RNU1-97P-201ENST00000516872 164 ntBASIC2.05□□□□□ -2.08
MSX2P35548 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.05□□□□□ -2.08
MSX2P35548 AC106754.2-201ENST00000623006 233 ntBASIC2.05□□□□□ -2.08
MSX2P35548 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.04□□□□□ -2.08
MSX2P35548 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
MSX2P35548 MIR342-201ENST00000362212 99 ntBASIC2.04□□□□□ -2.08
MSX2P35548 U8.2-201ENST00000363156 134 ntBASIC2.04□□□□□ -2.08
MSX2P35548 Y_RNA.348-201ENST00000365403 103 ntBASIC2.04□□□□□ -2.08
MSX2P35548 RNA5SP37-201ENST00000365420 130 ntBASIC2.04□□□□□ -2.08
MSX2P35548 RNU6-905P-201ENST00000384434 107 ntBASIC2.04□□□□□ -2.08
MSX2P35548 MIR1302-5-201ENST00000408164 150 ntBASIC2.04□□□□□ -2.08
MSX2P35548 AL356379.1-201ENST00000414105 126 ntBASIC2.04□□□□□ -2.08
MSX2P35548 AC099513.1-201ENST00000490423 301 ntBASIC2.04□□□□□ -2.08
MSX2P35548 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.04□□□□□ -2.08
MSX2P35548 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.04□□□□□ -2.08
MSX2P35548 MIR4778-201ENST00000577635 80 ntBASIC2.04□□□□□ -2.08
MSX2P35548 MIR4287-201ENST00000579398 78 ntBASIC2.04□□□□□ -2.08
MSX2P35548 MIR5582-201ENST00000579697 68 ntBASIC2.04□□□□□ -2.08
MSX2P35548 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 229.7 ms