Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 C8orf59P2-201ENST00000603441 271 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC124312.5-201ENST00000604451 268 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AL021707.8-201ENST00000609428 183 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AL008718.3-201ENST00000610217 321 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 AC243994.1-201ENST00000618627 109 ntBASIC0.42□□□□□ -2.34
SCN1AP35498 Y_RNA.395-201ENST00000383945 109 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 SNORA36.2-201ENST00000384004 127 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 SNORA40.5-201ENST00000391061 128 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 RNA5SP496-201ENST00000391240 109 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 RNU2-70P-201ENST00000410718 179 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 RPS3AP1-201ENST00000413190 320 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 RNU7-73P-201ENST00000458743 63 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 RNU6-94P-201ENST00000607728 107 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 PART1_1.1-201ENST00000611761 217 ntBASIC0.41□□□□□ -2.34
SCN1AP35498 RNU6-110P-201ENST00000384508 104 ntBASIC0.4□□□□□ -2.34
SCN1AP35498 Y_RNA.535-201ENST00000384612 99 ntBASIC0.4□□□□□ -2.34
SCN1AP35498 RNU6-383P-201ENST00000410864 94 ntBASIC0.4□□□□□ -2.34
SCN1AP35498 RNU2-55P-201ENST00000411146 174 ntBASIC0.4□□□□□ -2.34
SCN1AP35498 RNU7-67P-201ENST00000459003 62 ntBASIC0.4□□□□□ -2.34
SCN1AP35498 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.4□□□□□ -2.34
SCN1AP35498 RNU6-197P-201ENST00000516680 100 ntBASIC0.4□□□□□ -2.34
SCN1AP35498 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
SCN1AP35498 AL589743.1-201ENST00000551932 2712 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.4□□□□□ -2.35
SCN1AP35498 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
SCN1AP35498 Y_RNA.61-201ENST00000362835 102 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 Y_RNA.634-201ENST00000364811 113 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 SNORA27-201ENST00000384323 126 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 MIR520F-201ENST00000384824 87 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 RPL39P25-201ENST00000449384 154 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 RNU7-56P-201ENST00000458744 62 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 RNU6-1143P-201ENST00000516125 104 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 RNU6-1338P-201ENST00000516328 91 ntBASIC0.4□□□□□ -2.35
SCN1AP35498 RNU6-1205P-201ENST00000363625 106 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 RNU6-728P-201ENST00000365375 104 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
SCN1AP35498 SNORD38B-201ENST00000384690 67 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 MIR573-201ENST00000384964 99 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 RPS26P5-201ENST00000418544 335 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 SNORD123-201ENST00000459473 70 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 Y_RNA.666-201ENST00000516187 112 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 RNU6-1270P-201ENST00000517128 108 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 MIR548AO-201ENST00000579992 96 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 AC131055.1-201ENST00000584626 316 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.39□□□□□ -2.35
SCN1AP35498 SNORD38B-202ENST00000625943 69 ntBASIC0.39□□□□□ -2.35
SCN1AP35498 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.39□□□□□ -2.35
SCN1AP35498 SNORD115-34-201ENST00000362441 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-12-201ENST00000362583 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-29-201ENST00000362834 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-9-201ENST00000362912 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-21-201ENST00000362963 81 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-14-201ENST00000363090 81 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-13-201ENST00000363358 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-41-201ENST00000363608 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-11-201ENST00000363616 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-5-201ENST00000363633 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-39-201ENST00000363694 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-4-201ENST00000363810 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-16-201ENST00000363887 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-6-201ENST00000363942 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-42-201ENST00000364273 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 Y_RNA.258-201ENST00000364613 105 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-15-201ENST00000364809 81 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-1-201ENST00000364961 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-26-201ENST00000365067 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-10-201ENST00000365073 81 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-43-201ENST00000365503 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-36-201ENST00000365629 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 RPS29P24-201ENST00000486345 171 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 RNU6-998P-201ENST00000515894 101 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC0.38□□□□□ -2.35
SCN1AP35498 AC011195.1-201ENST00000578177 177 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 MIR4423-201ENST00000580922 80 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 AC006006.1-201ENST00000603082 144 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORD115-40-201ENST00000606510 82 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 MIR6755-201ENST00000619993 66 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 MIR6516-201ENST00000630554 81 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 RNA5SP457-201ENST00000363657 124 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORA1.1-201ENST00000364671 133 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 RNU6-580P-201ENST00000365159 107 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORA8.3-201ENST00000384679 139 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 MTCO2P12-201ENST00000427426 682 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 AL035398.1-201ENST00000430869 322 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 SNORA40.15-201ENST00000516884 107 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 RNU6-958P-201ENST00000516995 106 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 RNU6-448P-201ENST00000517052 107 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 Y_RNA.721-201ENST00000517207 102 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 AC131281.1-201ENST00000522984 164 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 AL353765.1-201ENST00000605514 183 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 MIR8055-201ENST00000610739 97 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 AC134878.1-201ENST00000619901 243 ntBASIC0.38□□□□□ -2.35
SCN1AP35498 MIR1-1-201ENST00000362147 71 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 Y_RNA.14-201ENST00000362415 103 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 Y_RNA.16-201ENST00000362421 102 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 Y_RNA.28-201ENST00000362554 111 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 Y_RNA.66-201ENST00000362862 102 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
SCN1AP35498 Y_RNA.389-201ENST00000383924 113 ntBASIC0.37□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 189.2 ms