Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 SNORA17.3-201ENST00000391159 129 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 RNU6-735P-201ENST00000410612 107 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.76□□□□□ -2.13
HOXD9P28356 MTATP6P21-201ENST00000440681 189 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 AL158147.1-201ENST00000443970 75 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 RN7SKP179-201ENST00000516126 217 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 Y_RNA.690-201ENST00000516603 95 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 RNA5SP481-201ENST00000516814 122 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 SCARNA15-202ENST00000516881 127 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 RNA5SP364-201ENST00000516938 78 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 AC090049.2-201ENST00000550377 109 ntBASIC1.76□□□□□ -2.13
HOXD9P28356 SNORD115-28-201ENST00000363931 81 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 RNU6-309P-201ENST00000364573 106 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 Y_RNA.294-201ENST00000364916 102 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 RNU6-163P-201ENST00000384396 106 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 U8.16-201ENST00000391279 133 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.75□□□□□ -2.13
HOXD9P28356 RN7SL274P-201ENST00000492268 272 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.75□□□□□ -2.13
HOXD9P28356 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.75□□□□□ -2.13
HOXD9P28356 RNU6-830P-201ENST00000516353 107 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 RNU7-25P-201ENST00000516544 62 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 Y_RNA.712-201ENST00000517011 92 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 RNA5SP437-201ENST00000517249 129 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 RNU6-1116P-201ENST00000517269 99 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.75□□□□□ -2.13
HOXD9P28356 MIR5197-201ENST00000583721 112 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.75□□□□□ -2.13
HOXD9P28356 MTND5P32-201ENST00000560711 1802 ntBASIC1.75□□□□□ -2.13
HOXD9P28356 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
HOXD9P28356 RNU6-834P-201ENST00000362367 110 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 Y_RNA.37-201ENST00000362606 108 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 Y_RNA.114-201ENST00000363265 113 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 Y_RNA.273-201ENST00000364703 102 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 CALM2P4-201ENST00000430810 426 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 AC087499.4-201ENST00000448505 178 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 RNA5SP168-201ENST00000516642 112 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 MIR502-201ENST00000606349 86 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 MIR376A2-201ENST00000636782 80 ntBASIC1.74□□□□□ -2.13
HOXD9P28356 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
HOXD9P28356 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC1.73□□□□□ -2.13
HOXD9P28356 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
HOXD9P28356 RNU2-7P-201ENST00000410794 178 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 Y_RNA.617-201ENST00000410920 90 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 RNU6-938P-201ENST00000411285 103 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 Y_RNA.651-201ENST00000459380 103 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 RNA5SP458-201ENST00000516188 119 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 MIR3618-201ENST00000580330 88 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.73□□□□□ -2.13
HOXD9P28356 AL359881.1-201ENST00000602916 267 ntBASIC1.73□□□□□ -2.13
HOXD9P28356 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.73□□□□□ -2.13
HOXD9P28356 RNU6-508P-201ENST00000363231 103 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 RNU6-457P-201ENST00000363999 107 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 RNU6-647P-201ENST00000364243 107 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 RNU6-1189P-201ENST00000383958 107 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 SNORD38C-201ENST00000384381 69 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
HOXD9P28356 RNU2-40P-201ENST00000410833 196 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 AC015922.2-201ENST00000435593 184 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 RNU7-107P-201ENST00000459121 61 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 snoU13.27-201ENST00000459278 104 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 AC099513.1-201ENST00000490423 301 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 RNU6-113P-201ENST00000516653 101 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 RNU6-1149P-201ENST00000516810 97 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 SNORA31.17-201ENST00000516953 127 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 AP000942.3-201ENST00000603702 160 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 AL022345.2-201ENST00000606307 135 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 AC103810.8-201ENST00000607347 118 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 AL513423.1-201ENST00000621695 132 ntBASIC1.72□□□□□ -2.13
HOXD9P28356 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
HOXD9P28356 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXD9P28356 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.71□□□□□ -2.14
HOXD9P28356 Y_RNA.140-201ENST00000363474 103 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 RNU4-52P-201ENST00000384209 138 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 RNU6-360P-201ENST00000390944 104 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 RNU7-12P-201ENST00000516030 62 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.71□□□□□ -2.14
HOXD9P28356 MIR4709-201ENST00000577272 72 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXD9P28356 AC021506.2-201ENST00000612354 169 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 MIR3914-2-201ENST00000637339 95 ntBASIC1.71□□□□□ -2.14
HOXD9P28356 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
HOXD9P28356 RNU6-235P-201ENST00000362644 107 ntBASIC1.7□□□□□ -2.14
HOXD9P28356 Y_RNA.353-201ENST00000365440 108 ntBASIC1.7□□□□□ -2.14
HOXD9P28356 AC108667.1-201ENST00000428618 249 ntBASIC1.7□□□□□ -2.14
HOXD9P28356 SNORA44.1-201ENST00000517031 108 ntBASIC1.7□□□□□ -2.14
HOXD9P28356 AC024614.2-201ENST00000577584 372 ntBASIC1.7□□□□□ -2.14
HOXD9P28356 MIR4448-201ENST00000584360 86 ntBASIC1.7□□□□□ -2.14
HOXD9P28356 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.7□□□□□ -2.14
HOXD9P28356 Y_RNA.440-201ENST00000384120 114 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 Y_RNA.525-201ENST00000384570 113 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 MIRLET7F2-201ENST00000385277 83 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 RPS26P48-201ENST00000491713 339 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 RNU6-772P-201ENST00000516042 105 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 AP003484.1-201ENST00000530974 250 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 AC015726.2-201ENST00000620112 122 ntBASIC1.69□□□□□ -2.14
HOXD9P28356 RNU6-661P-201ENST00000362409 107 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 194.4 ms