Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AC087499.4-201ENST00000448505 178 ntBASIC0.68□□□□□ -2.3
VIMP08670 RNU6-958P-201ENST00000516995 106 ntBASIC0.68□□□□□ -2.3
VIMP08670 AC011195.1-201ENST00000578177 177 ntBASIC0.68□□□□□ -2.3
VIMP08670 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
VIMP08670 Y_RNA.37-201ENST00000362606 108 ntBASIC0.67□□□□□ -2.3
VIMP08670 Y_RNA.117-201ENST00000363294 101 ntBASIC0.67□□□□□ -2.3
VIMP08670 Y_RNA.229-201ENST00000364347 113 ntBASIC0.67□□□□□ -2.3
VIMP08670 Y_RNA.275-201ENST00000364726 110 ntBASIC0.67□□□□□ -2.3
VIMP08670 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
VIMP08670 RNU6-639P-201ENST00000384074 107 ntBASIC0.67□□□□□ -2.3
VIMP08670 SNORD61-201ENST00000384252 73 ntBASIC0.67□□□□□ -2.3
VIMP08670 MIR548A2-201ENST00000384956 97 ntBASIC0.67□□□□□ -2.3
VIMP08670 RNU1-119P-201ENST00000391122 165 ntBASIC0.67□□□□□ -2.3
VIMP08670 RNU6-938P-201ENST00000411285 103 ntBASIC0.67□□□□□ -2.3
VIMP08670 AC244098.3-201ENST00000424803 96 ntBASIC0.67□□□□□ -2.3
VIMP08670 SNORA18.4-201ENST00000516440 124 ntBASIC0.67□□□□□ -2.3
VIMP08670 AC100767.1-201ENST00000528178 123 ntBASIC0.67□□□□□ -2.3
VIMP08670 MIR4264-201ENST00000583520 66 ntBASIC0.67□□□□□ -2.3
VIMP08670 AP000942.4-201ENST00000604811 241 ntBASIC0.67□□□□□ -2.3
VIMP08670 uc_338.17-201ENST00000619633 179 ntBASIC0.67□□□□□ -2.3
VIMP08670 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.67□□□□□ -2.3
VIMP08670 RNU6-369P-201ENST00000362515 102 ntBASIC0.66□□□□□ -2.3
VIMP08670 SNORD24-201ENST00000383884 75 ntBASIC0.66□□□□□ -2.3
VIMP08670 SNORA40.5-201ENST00000391061 128 ntBASIC0.66□□□□□ -2.3
VIMP08670 RNU6-733P-201ENST00000410759 104 ntBASIC0.66□□□□□ -2.3
VIMP08670 RNU6-237P-201ENST00000515985 71 ntBASIC0.66□□□□□ -2.3
VIMP08670 RNU6-365P-201ENST00000517113 106 ntBASIC0.66□□□□□ -2.3
VIMP08670 RNU6-1270P-201ENST00000517128 108 ntBASIC0.66□□□□□ -2.3
VIMP08670 AP003484.1-201ENST00000530974 250 ntBASIC0.66□□□□□ -2.3
VIMP08670 MIR3973-201ENST00000579824 107 ntBASIC0.66□□□□□ -2.3
VIMP08670 MIR4298-201ENST00000584380 73 ntBASIC0.66□□□□□ -2.3
VIMP08670 AC044792.1-201ENST00000593294 196 ntBASIC0.66□□□□□ -2.3
VIMP08670 RNU6-934P-201ENST00000365154 107 ntBASIC0.65□□□□□ -2.31
VIMP08670 MIR626-201ENST00000385032 94 ntBASIC0.65□□□□□ -2.31
VIMP08670 SNORD83.1-201ENST00000411362 77 ntBASIC0.65□□□□□ -2.31
VIMP08670 AC244023.1-201ENST00000426884 112 ntBASIC0.65□□□□□ -2.31
VIMP08670 SNORD36C-201ENST00000516733 66 ntBASIC0.65□□□□□ -2.31
VIMP08670 RNU6-1153P-201ENST00000516760 105 ntBASIC0.65□□□□□ -2.31
VIMP08670 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.65□□□□□ -2.31
VIMP08670 AC242498.1-201ENST00000604134 111 ntBASIC0.65□□□□□ -2.31
VIMP08670 MIR6835-201ENST00000621552 64 ntBASIC0.65□□□□□ -2.31
VIMP08670 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.31
VIMP08670 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.65□□□□□ -2.31
VIMP08670 Y_RNA.44-201ENST00000362676 108 ntBASIC0.64□□□□□ -2.31
VIMP08670 SNORA27-201ENST00000384323 126 ntBASIC0.64□□□□□ -2.31
VIMP08670 RNU6-913P-201ENST00000390913 95 ntBASIC0.64□□□□□ -2.31
VIMP08670 AC015818.7-201ENST00000428754 109 ntBASIC0.64□□□□□ -2.31
VIMP08670 AC087499.7-201ENST00000441958 109 ntBASIC0.64□□□□□ -2.31
VIMP08670 TRBVB-201ENST00000477100 408 ntBASIC0.64□□□□□ -2.31
VIMP08670 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.64□□□□□ -2.31
VIMP08670 RNU6-1053P-201ENST00000515930 101 ntBASIC0.64□□□□□ -2.31
VIMP08670 RNU6-126P-201ENST00000516685 103 ntBASIC0.64□□□□□ -2.31
VIMP08670 AP001282.2-201ENST00000616149 309 ntBASIC0.64□□□□□ -2.31
VIMP08670 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
VIMP08670 RNU6-888P-201ENST00000363010 101 ntBASIC0.63□□□□□ -2.31
VIMP08670 RNU6-740P-201ENST00000364734 105 ntBASIC0.63□□□□□ -2.31
VIMP08670 MIR92A1-201ENST00000385233 78 ntBASIC0.63□□□□□ -2.31
VIMP08670 RNU6-1109P-201ENST00000391187 107 ntBASIC0.63□□□□□ -2.31
VIMP08670 RNU6-321P-201ENST00000410912 106 ntBASIC0.63□□□□□ -2.31
VIMP08670 RNA5SP222-201ENST00000411039 105 ntBASIC0.63□□□□□ -2.31
VIMP08670 RNU7-73P-201ENST00000458743 63 ntBASIC0.63□□□□□ -2.31
VIMP08670 MIR4771-2-201ENST00000577758 74 ntBASIC0.63□□□□□ -2.31
VIMP08670 MIR4771-1-201ENST00000582617 74 ntBASIC0.63□□□□□ -2.31
VIMP08670 RMST_2.1-201ENST00000617263 136 ntBASIC0.63□□□□□ -2.31
VIMP08670 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.62□□□□□ -2.31
VIMP08670 Y_RNA.237-201ENST00000364439 102 ntBASIC0.62□□□□□ -2.31
VIMP08670 Y_RNA.338-201ENST00000365320 114 ntBASIC0.62□□□□□ -2.31
VIMP08670 MT-TT-201ENST00000387460 66 ntBASIC0.62□□□□□ -2.31
VIMP08670 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.62□□□□□ -2.31
VIMP08670 RNU7-62P-201ENST00000458856 62 ntBASIC0.62□□□□□ -2.31
VIMP08670 RPS29P24-201ENST00000486345 171 ntBASIC0.62□□□□□ -2.31
VIMP08670 RNU6-977P-201ENST00000516411 103 ntBASIC0.62□□□□□ -2.31
VIMP08670 RNU6-504P-201ENST00000516568 104 ntBASIC0.62□□□□□ -2.31
VIMP08670 MIR8055-201ENST00000610739 97 ntBASIC0.62□□□□□ -2.31
VIMP08670 Y_RNA.66-201ENST00000362862 102 ntBASIC0.61□□□□□ -2.31
VIMP08670 Y_RNA.91-201ENST00000363042 107 ntBASIC0.61□□□□□ -2.31
VIMP08670 SNORD114-27-201ENST00000363766 70 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU6-1227P-201ENST00000383981 107 ntBASIC0.61□□□□□ -2.31
VIMP08670 Y_RNA.512-201ENST00000384518 102 ntBASIC0.61□□□□□ -2.31
VIMP08670 SNORD38B-201ENST00000384690 67 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU6-713P-201ENST00000384761 107 ntBASIC0.61□□□□□ -2.31
VIMP08670 MIR520F-201ENST00000384824 87 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU6-651P-201ENST00000411040 105 ntBASIC0.61□□□□□ -2.31
VIMP08670 HMGN1P33-201ENST00000432945 451 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU6-1299P-201ENST00000516316 100 ntBASIC0.61□□□□□ -2.31
VIMP08670 RNU7-53P-201ENST00000516705 60 ntBASIC0.61□□□□□ -2.31
VIMP08670 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC0.61□□□□□ -2.31
VIMP08670 AC133485.1-201ENST00000567176 124 ntBASIC0.61□□□□□ -2.31
VIMP08670 AC138907.6-201ENST00000568401 126 ntBASIC0.61□□□□□ -2.31
VIMP08670 SNORD38B-202ENST00000625943 69 ntBASIC0.61□□□□□ -2.31
VIMP08670 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.6□□□□□ -2.31
VIMP08670 RNU6-484P-201ENST00000384016 107 ntBASIC0.6□□□□□ -2.31
VIMP08670 RNU2-70P-201ENST00000410718 179 ntBASIC0.6□□□□□ -2.31
VIMP08670 AF228730.3-201ENST00000436691 102 ntBASIC0.6□□□□□ -2.31
VIMP08670 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.6□□□□□ -2.31
VIMP08670 uc_338.6-201ENST00000613544 171 ntBASIC0.6□□□□□ -2.31
VIMP08670 Z97988.1-201ENST00000637697 135 ntBASIC0.6□□□□□ -2.31
VIMP08670 MIR373-201ENST00000362273 69 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms