Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 RNU7-56P-201ENST00000458744 62 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 SNORA18.4-201ENST00000516440 124 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.32□□□□□ -2.36
HLA-DQA1P01909 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.32□□□□□ -2.36
HLA-DQA1P01909 MIR4724-201ENST00000579485 89 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 MIR4676-201ENST00000583078 72 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 Z83818.1-201ENST00000603584 150 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 SNORD115-40-201ENST00000606510 82 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 MIR8055-201ENST00000610739 97 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.32□□□□□ -2.36
HLA-DQA1P01909 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.31□□□□□ -2.36
HLA-DQA1P01909 MIR18A-201ENST00000362310 71 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 SNORD115-28-201ENST00000363931 81 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.214-201ENST00000364201 112 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.238-201ENST00000364441 102 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 RNU6-806P-201ENST00000365147 105 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.587-201ENST00000391210 103 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 RNU6-101P-201ENST00000410323 104 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 HMGN1P33-201ENST00000432945 451 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 RNU7-62P-201ENST00000458856 62 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 MTCO2P24-201ENST00000515611 426 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 RNU6-693P-201ENST00000516134 107 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 SNORD77.4-201ENST00000516158 81 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 MIR3612-201ENST00000579753 87 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 AL355297.3-201ENST00000604082 446 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 AL162730.1-201ENST00000605734 292 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 MIR6740-201ENST00000618268 113 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 AC243829.3-201ENST00000622177 108 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 snoU18.1-201ENST00000629629 71 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 MTND4P29-201ENST00000503122 1372 ntBASIC0.31□□□□□ -2.36
HLA-DQA1P01909 MIR367-201ENST00000362299 68 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.26-201ENST00000362539 101 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.28-201ENST00000362554 111 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.37-201ENST00000362606 108 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 RNU6-290P-201ENST00000365212 101 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 SNORA50A-201ENST00000384225 134 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 SNORD61-201ENST00000384252 73 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.572-201ENST00000384757 98 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 MIR518F-201ENST00000384973 87 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 SNORA40.5-201ENST00000391061 128 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 RPL21P38-201ENST00000418090 167 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 AC098934.3-201ENST00000430450 190 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.3□□□□□ -2.36
HLA-DQA1P01909 AC087499.4-201ENST00000448505 178 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 SNORA68.3-201ENST00000515906 83 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 RNU2-31P-201ENST00000516954 155 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 AP000942.4-201ENST00000604811 241 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 AL008718.3-201ENST00000610217 321 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.3□□□□□ -2.36
HLA-DQA1P01909 RNU6-770P-201ENST00000363929 105 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 RNU1-133P-201ENST00000364867 167 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 RNU6-42P-201ENST00000384165 107 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.509-201ENST00000384506 99 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 SNORD38B-201ENST00000384690 67 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 MIR548A2-201ENST00000384956 97 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.29□□□□□ -2.36
HLA-DQA1P01909 RNU7-73P-201ENST00000458743 63 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 RNU6-1132P-201ENST00000459214 107 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 RN7SKP12-201ENST00000516275 143 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 SNORA27.4-201ENST00000516650 95 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 SNORD36C-201ENST00000516733 66 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 SNORD38B-202ENST00000625943 69 ntBASIC0.29□□□□□ -2.36
HLA-DQA1P01909 AC010332.2-201ENST00000613083 1904 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.16-201ENST00000362421 102 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.19-201ENST00000362462 99 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 RNU6-1309P-201ENST00000363305 108 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.122-201ENST00000363331 96 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 RNA5SP499-201ENST00000363982 119 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.217-201ENST00000364214 105 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 RNU6-326P-201ENST00000365480 107 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.380-201ENST00000365663 111 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.431-201ENST00000384086 102 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 SNORA27-201ENST00000384323 126 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.641-201ENST00000459414 105 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 RNY3P15-201ENST00000516297 97 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 RNU6-1270P-201ENST00000517128 108 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Y_RNA.721-201ENST00000517207 102 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.28□□□□□ -2.36
HLA-DQA1P01909 AC100767.1-201ENST00000528178 123 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 AC008608.1-201ENST00000603910 127 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 Z97988.1-201ENST00000637697 135 ntBASIC0.28□□□□□ -2.36
HLA-DQA1P01909 SNORA25.1-201ENST00000362326 128 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 Y_RNA.24-201ENST00000362508 103 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 Y_RNA.64-201ENST00000362845 102 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 MIR588-201ENST00000384900 83 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 RNU6-679P-201ENST00000391003 106 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 RNU6-1190P-201ENST00000410811 104 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 RNU6-602P-201ENST00000411155 105 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 AC092628.1-201ENST00000436250 252 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 MTATP6P23-201ENST00000440153 476 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 AL138752.1-201ENST00000452964 351 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 SNORA40.15-201ENST00000516884 107 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 MIR6513-201ENST00000621188 64 ntBASIC0.27□□□□□ -2.37
HLA-DQA1P01909 Y_RNA.116-201ENST00000363292 103 ntBASIC0.26□□□□□ -2.37
HLA-DQA1P01909 Y_RNA.210-201ENST00000364161 110 ntBASIC0.26□□□□□ -2.37
HLA-DQA1P01909 SNORA22B-201ENST00000383876 138 ntBASIC0.26□□□□□ -2.37
HLA-DQA1P01909 Y_RNA.527-201ENST00000384573 102 ntBASIC0.26□□□□□ -2.37
HLA-DQA1P01909 SNORD12C-201ENST00000386307 89 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms