Protein–RNA interactions for Protein: A0A0J9YXS1

NPHP3-ACAD11, NPHP3-ACAD11 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11A0A0J9YXS1 SNORD115-36-201ENST00000365629 82 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNY1P6-201ENST00000384193 109 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR144-201ENST00000384886 86 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 U8.17-201ENST00000391292 132 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR1267-201ENST00000408723 78 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 PGBD4P5-201ENST00000445958 426 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNORD115-40-201ENST00000606510 82 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AL596211.1-201ENST00000569873 2277 ntBASIC2.27□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU6-755P-201ENST00000364400 103 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.454-201ENST00000384224 113 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU6-880P-201ENST00000384526 107 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNA5SP338-201ENST00000410495 85 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNX2P2-201ENST00000424553 323 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 COX6CP6-201ENST00000490840 228 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNORA31.17-201ENST00000516953 127 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC090821.2-201ENST00000523552 176 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR4778-201ENST00000577635 80 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR5089-201ENST00000580047 84 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 DLEU2_5.2-201ENST00000610606 84 ntBASIC2.26□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR570-201ENST00000384917 97 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR136-201ENST00000385207 82 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU6-717P-201ENST00000459076 104 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC079804.2-201ENST00000490376 200 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNY4P20-201ENST00000516678 93 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU2-19P-201ENST00000517288 84 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR4648-201ENST00000580107 72 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 HSPE1P19-201ENST00000603327 295 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC021443.1-201ENST00000604478 211 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC245884.12-201ENST00000615364 59 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNORD3E-202ENST00000627253 216 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR219B-201ENST00000637023 88 ntBASIC2.25□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR526A1-201ENST00000384897 85 ntBASIC2.24□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RPS29P24-201ENST00000486345 171 ntBASIC2.24□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU6-998P-201ENST00000515894 101 ntBASIC2.24□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC078899.2-201ENST00000595282 212 ntBASIC2.24□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.24□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 MIR424-201ENST00000362227 98 ntBASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNORA70B-201ENST00000384210 135 ntBASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU7-96P-201ENST00000459535 64 ntBASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC055731.1-201ENST00000474387 401 ntBASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNORA31.4-201ENST00000516049 129 ntBASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.23□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU4-16P-201ENST00000364737 141 ntBASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.298-201ENST00000364960 107 ntBASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SNORA1.2-201ENST00000365189 134 ntBASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 RNU7-164P-201ENST00000459221 62 ntBASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 SUMO2P16-201ENST00000519475 264 ntBASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
NPHP3-ACAD11A0A0J9YXS1 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.198-201ENST00000364013 98 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-360P-201ENST00000390944 104 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SNORD23.1-201ENST00000408212 104 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AL035398.1-201ENST00000430869 322 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC025033.1-201ENST00000463883 194 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RN7SL429P-201ENST00000479090 223 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RN7SL489P-201ENST00000486185 223 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RN7SL327P-201ENST00000488659 223 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC007012.1-201ENST00000567192 175 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR4305-201ENST00000583252 102 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR6895-201ENST00000613497 78 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RN7SL853P-201ENST00000617250 223 ntBASIC2.21□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR302B-201ENST00000362188 73 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-457P-201ENST00000363999 107 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SNORA67.1-201ENST00000364749 141 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.370-201ENST00000365589 108 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU2-11P-201ENST00000459191 187 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC107297.1-201ENST00000459991 176 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU7-123P-201ENST00000515911 60 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR3945-201ENST00000581853 98 ntBASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.2□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-203P-201ENST00000384038 104 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.549-201ENST00000384657 102 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MT-TI-201ENST00000387365 69 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SNORD28B-201ENST00000390993 75 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RN7SKP192-201ENST00000411291 327 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNA5SP57-201ENST00000459463 123 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 SNORD123-201ENST00000459473 70 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 AC090255.1-201ENST00000495779 349 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU2-35P-201ENST00000516446 142 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR3683-201ENST00000580847 82 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR548AR-201ENST00000582191 57 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR4448-201ENST00000584360 86 ntBASIC2.19□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNA5SP276-201ENST00000362580 94 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.213-201ENST00000364178 111 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 Y_RNA.281-201ENST00000364774 94 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNA5SP138-201ENST00000365098 114 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 RNU6-1104P-201ENST00000384723 104 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 MIR524-201ENST00000385242 87 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 HMGN2P38-201ENST00000423806 265 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 UBL5P3-201ENST00000475112 231 ntBASIC2.18□□□□□ -2.06
NPHP3-ACAD11A0A0J9YXS1 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms