Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 MIR1185-1-201ENST00000408598 86 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 AC023449.1-201ENST00000454464 154 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 SNORD124-201ENST00000459577 104 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 RN7SKP164-201ENST00000516138 266 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 MIR3973-201ENST00000579824 107 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 AL021707.8-201ENST00000609428 183 ntBASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.92□□□□□ -2.26
PCDHGA1Q9Y5H4 BTF3P11-201ENST00000426582 477 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 SERF1AP1-201ENST00000514575 187 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU6-1338P-201ENST00000516328 91 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 RNU11-2P-201ENST00000516898 142 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 uc_338.4-201ENST00000616635 176 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 SEPT14P17-201ENST00000617978 177 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 AC008133.2-201ENST00000624540 351 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 snoU18.1-201ENST00000629629 71 ntBASIC0.91□□□□□ -2.26
PCDHGA1Q9Y5H4 Y_RNA.14-201ENST00000362415 103 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-1067P-201ENST00000384752 107 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR216A-201ENST00000385063 110 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR942-201ENST00000401111 86 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-1203P-201ENST00000410703 110 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR4724-201ENST00000579485 89 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR5688-201ENST00000580619 83 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 AL008718.3-201ENST00000610217 321 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR4251-201ENST00000635819 61 ntBASIC0.9□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.422-201ENST00000384054 114 ntBASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-1109P-201ENST00000391187 107 ntBASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 AL392103.1-201ENST00000447000 198 ntBASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU4-57P-201ENST00000515980 135 ntBASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU7-149P-201ENST00000516739 59 ntBASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.89□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR367-201ENST00000362299 68 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.293-201ENST00000364908 93 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.330-201ENST00000365230 109 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-1138P-201ENST00000365359 106 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.537-201ENST00000384626 109 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR526A2-201ENST00000390198 65 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR1302-7-201ENST00000408841 72 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 AC113618.1-201ENST00000416747 285 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 AC004941.2-201ENST00000427009 228 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 MTND5P22-201ENST00000458380 195 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU7-181P-201ENST00000517234 74 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR4653-201ENST00000585107 83 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 AL049861.1-201ENST00000603130 150 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 AC108706.1-201ENST00000611053 297 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 AC015726.2-201ENST00000620112 122 ntBASIC0.88□□□□□ -2.27
PCDHGA1Q9Y5H4 SNORA1.2-201ENST00000365189 134 ntBASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.370-201ENST00000365589 108 ntBASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-1132P-201ENST00000459214 107 ntBASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 MTCO2P24-201ENST00000515611 426 ntBASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 SCARNA24.2-201ENST00000516968 130 ntBASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.87□□□□□ -2.27
PCDHGA1Q9Y5H4 RNY1P4-201ENST00000384595 115 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.547-201ENST00000384654 119 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR608-201ENST00000384820 100 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR570-201ENST00000384917 97 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU2-13P-201ENST00000515909 113 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 SNORD77.4-201ENST00000516158 81 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 ACA64.5-201ENST00000516207 127 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-570P-201ENST00000517051 105 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 DEFB108E-201ENST00000524692 240 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 AC131055.1-201ENST00000584626 316 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.802-201ENST00000614892 130 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.86□□□□□ -2.27
PCDHGA1Q9Y5H4 Y_RNA.275-201ENST00000364726 110 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-211P-201ENST00000384047 107 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 RPS3AP1-201ENST00000413190 320 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 AP003072.1-201ENST00000531740 145 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 AC109810.1-201ENST00000534066 224 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 AC025627.3-201ENST00000582078 182 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR4791-201ENST00000607666 84 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 AP001282.2-201ENST00000616149 309 ntBASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.85□□□□□ -2.27
PCDHGA1Q9Y5H4 SNORA51.10-201ENST00000384418 136 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-1289P-201ENST00000384431 106 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR548O-201ENST00000408583 114 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-847P-201ENST00000411115 108 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 TRBVB-201ENST00000477100 408 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 PSMC1P5-201ENST00000512850 177 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 RNA5SP255-201ENST00000516370 107 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU7-25P-201ENST00000516544 62 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 RNU6-197P-201ENST00000516680 100 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 AC036111.3-201ENST00000526389 112 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 AC023827.1-201ENST00000569247 97 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR4662B-201ENST00000579498 81 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 AL136317.1-201ENST00000612653 226 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 MIR6516-201ENST00000630554 81 ntBASIC0.84□□□□□ -2.27
PCDHGA1Q9Y5H4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.84□□□□□ -2.28
PCDHGA1Q9Y5H4 RNU4-10P-201ENST00000364383 140 ntBASIC0.83□□□□□ -2.28
PCDHGA1Q9Y5H4 Y_RNA.326-201ENST00000365176 113 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 208.5 ms