Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AL442644.1-201ENST00000454390 3105 ntBASIC1.93□□□□□ -2.1
LIMCH1Q9UPQ0 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-888P-201ENST00000363010 101 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 Y_RNA.400-201ENST00000383963 111 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-187P-201ENST00000384139 106 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 AC093850.1-201ENST00000454121 251 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 snoU13.9-201ENST00000458927 103 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-693P-201ENST00000516134 107 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 Y_RNA.666-201ENST00000516187 112 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-346P-201ENST00000516288 111 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 MIR4778-201ENST00000577635 80 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 MIR4255-201ENST00000579351 72 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 AC095038.3-201ENST00000634439 195 ntBASIC1.92□□□□□ -2.1
LIMCH1Q9UPQ0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 Y_RNA.66-201ENST00000362862 102 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 SNORA25.7-201ENST00000364375 127 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 RNU6-597P-201ENST00000365620 102 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 Y_RNA.393-201ENST00000383936 102 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 SNORD61-201ENST00000384252 73 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 MIR513A1-201ENST00000385138 129 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 MIR136-201ENST00000385207 82 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 MIR613-201ENST00000385248 95 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 MIR548O-201ENST00000408583 114 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 SUMO2P16-201ENST00000519475 264 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 MIR3646-201ENST00000578301 84 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 MIR6845-201ENST00000613182 61 ntBASIC1.91□□□□□ -2.1
LIMCH1Q9UPQ0 SNORD50.2-201ENST00000365465 70 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 SNORA2.2-201ENST00000365473 135 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.542-201ENST00000384641 111 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 RNA5SP247-201ENST00000411181 105 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 AC090142.3-201ENST00000519012 385 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 AC015712.3-201ENST00000559380 164 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 AC015688.6-201ENST00000577737 104 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 DNAJC19P2-201ENST00000593340 302 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.778-201ENST00000620203 90 ntBASIC1.9□□□□□ -2.11
LIMCH1Q9UPQ0 SNORD33-201ENST00000362761 85 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-151P-201ENST00000364158 107 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.215-201ENST00000364204 112 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-978P-201ENST00000364371 103 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 RNA5SP259-201ENST00000365541 109 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 AL603825.1-201ENST00000438481 80 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-322P-201ENST00000516010 103 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-406P-201ENST00000516470 107 ntBASIC1.89□□□□□ -2.11
LIMCH1Q9UPQ0 ICE2P2-201ENST00000483823 2787 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-704P-201ENST00000364162 103 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.343-201ENST00000365354 112 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.488-201ENST00000384403 102 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.547-201ENST00000384654 119 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 AL591806.2-201ENST00000433122 173 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 AC087499.4-201ENST00000448505 178 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 HMGN2P23-201ENST00000456759 269 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-548P-201ENST00000517083 115 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 MIR3910-1-201ENST00000580936 111 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 AL365205.2-201ENST00000594586 68 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 AC134878.1-201ENST00000619901 243 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.88□□□□□ -2.11
LIMCH1Q9UPQ0 SNORD115-28-201ENST00000363931 81 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-457P-201ENST00000363999 107 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-1292P-201ENST00000383856 107 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 MIR653-201ENST00000385279 96 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 AL627390.1-201ENST00000396055 340 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 AC008834.1-201ENST00000511612 175 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 RNU7-25P-201ENST00000516544 62 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-1270P-201ENST00000517128 108 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 AC090049.2-201ENST00000550377 109 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 MIR548X2-201ENST00000579776 100 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 AP001485.1-201ENST00000604799 199 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 MIR502-201ENST00000606349 86 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 AC015726.2-201ENST00000620112 122 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 MIR6844-201ENST00000637122 62 ntBASIC1.87□□□□□ -2.11
LIMCH1Q9UPQ0 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-818P-201ENST00000364837 108 ntBASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.410-201ENST00000383992 113 ntBASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 MIR518F-201ENST00000384973 87 ntBASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 SNORA75.5-201ENST00000391291 81 ntBASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 TMSB4XP3-201ENST00000445144 114 ntBASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 AC007751.1-201ENST00000529260 376 ntBASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.86□□□□□ -2.11
LIMCH1Q9UPQ0 WWP1P1-201ENST00000466609 2769 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 SNORA1.2-201ENST00000365189 134 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-768P-201ENST00000384683 107 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 MIR548A2-201ENST00000384956 97 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 MIR516B2-201ENST00000385190 85 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 SNORD37.2-201ENST00000391075 66 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 RNU6-295P-201ENST00000516901 104 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 FAM106DP-201ENST00000586416 501 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 AL513534.2-201ENST00000603836 250 ntBASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
LIMCH1Q9UPQ0 Y_RNA.497-201ENST00000384447 98 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 MIR526A1-201ENST00000384897 85 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 MIR764-201ENST00000390811 85 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 MIR513C-201ENST00000401352 84 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms