| APPL1 | Q9UKG1 | SNORA51.10-201 | ENST00000384418 | 136 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | Y_RNA.569-201 | ENST00000384749 | 103 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU6-613P-201 | ENST00000410412 | 108 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU6-733P-201 | ENST00000410759 | 104 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AJ239322.2-201 | ENST00000421696 | 575 nt | TSL 5 BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MTCO1P5-201 | ENST00000433573 | 344 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AP003484.1-201 | ENST00000530974 | 250 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | LINC02277-202 | ENST00000556472 | 453 nt | TSL 3 BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR6779-201 | ENST00000617283 | 64 nt | BASIC | 0.62 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNA5SP347-201 | ENST00000362445 | 119 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU6-899P-201 | ENST00000363947 | 107 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | Y_RNA.431-201 | ENST00000384086 | 102 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU1-119P-201 | ENST00000391122 | 165 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC022028.1-201 | ENST00000412054 | 408 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MTND4LP11-201 | ENST00000422184 | 280 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | Y_RNA.637-201 | ENST00000459424 | 114 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR548AO-201 | ENST00000579992 | 96 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR4791-201 | ENST00000607666 | 84 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC006441.5-201 | ENST00000612680 | 209 nt | BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | ZBTB41-201 | ENST00000367405 | 8478 nt | APPRIS P1 TSL 1 (best) BASIC | 0.61 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | HECTD2-202 | ENST00000371667 | 4354 nt | TSL 1 (best) BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | Y_RNA.28-201 | ENST00000362554 | 111 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU4-90P-201 | ENST00000362773 | 141 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | Y_RNA.136-201 | ENST00000363444 | 102 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU6-1205P-201 | ENST00000363625 | 106 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | SNORA63.7-201 | ENST00000365579 | 123 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR215-201 | ENST00000384858 | 110 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | SNORD105-201 | ENST00000386910 | 85 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR1827-201 | ENST00000408549 | 66 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR1252-201 | ENST00000408861 | 65 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU6-101P-201 | ENST00000410323 | 104 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU4-57P-201 | ENST00000515980 | 135 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC011195.1-201 | ENST00000578177 | 177 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | C8orf59P2-201 | ENST00000603441 | 271 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | uc_338.17-201 | ENST00000619633 | 179 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MTND1P7-201 | ENST00000632801 | 297 nt | BASIC | 0.6 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU6-806P-201 | ENST00000365147 | 105 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | Y_RNA.376-201 | ENST00000365638 | 108 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | MIR92A1-201 | ENST00000385233 | 78 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC092628.1-201 | ENST00000436250 | 252 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU4-54P-201 | ENST00000516428 | 129 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | RNU7-25P-201 | ENST00000516544 | 62 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC090155.2-201 | ENST00000518854 | 267 nt | TSL 3 BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC018659.1-201 | ENST00000551083 | 169 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | AC022140.2-201 | ENST00000623500 | 188 nt | BASIC | 0.59 | □□□□□ -2.31 | | |
| APPL1 | Q9UKG1 | CXADR-202 | ENST00000356275 | 270 nt | TSL 1 (best) BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.26-201 | ENST00000362539 | 101 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | snoU2_19.2-201 | ENST00000363024 | 80 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.138-201 | ENST00000363462 | 102 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.168-201 | ENST00000363740 | 102 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | SNORA22B-201 | ENST00000383876 | 138 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-662P-201 | ENST00000384253 | 104 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNY1P4-201 | ENST00000384595 | 115 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.537-201 | ENST00000384626 | 109 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.541-201 | ENST00000384640 | 113 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.581-201 | ENST00000391017 | 97 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | ELOCP20-201 | ENST00000422460 | 345 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AC023449.1-201 | ENST00000454464 | 154 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU7-149P-201 | ENST00000516739 | 59 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | MIR4711-201 | ENST00000578274 | 70 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AL049861.1-201 | ENST00000603130 | 150 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AC013791.1-201 | ENST00000616619 | 62 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AL160413.1-201 | ENST00000622780 | 310 nt | BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | C18orf54-201 | ENST00000300091 | 5237 nt | APPRIS P1 TSL 1 (best) BASIC | 0.58 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.214-201 | ENST00000364201 | 112 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.216-201 | ENST00000364205 | 93 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.494-201 | ENST00000384432 | 111 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.547-201 | ENST00000384654 | 119 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNA5SP193-201 | ENST00000410353 | 107 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNA5SP222-201 | ENST00000411039 | 105 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RPL21P38-201 | ENST00000418090 | 167 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | snoU13.21-201 | ENST00000459368 | 105 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.631-201 | ENST00000459607 | 101 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AC095059.1-201 | ENST00000502570 | 349 nt | TSL 5 BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AP000753.3-201 | ENST00000604083 | 169 nt | BASIC | 0.57 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-290P-201 | ENST00000365212 | 101 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-144P-201 | ENST00000383951 | 107 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | SNORA36.2-201 | ENST00000384004 | 127 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.527-201 | ENST00000384573 | 102 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-205P-201 | ENST00000390858 | 107 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | MIR548O-201 | ENST00000408583 | 114 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-847P-201 | ENST00000411115 | 108 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | BTF3P11-201 | ENST00000426582 | 477 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.666-201 | ENST00000516187 | 112 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNY3P15-201 | ENST00000516297 | 97 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | SNORA40.15-201 | ENST00000516884 | 107 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-988P-201 | ENST00000519081 | 107 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | MIR5692C2-201 | ENST00000577959 | 77 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | uc_338.4-201 | ENST00000616635 | 176 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AC243994.1-201 | ENST00000618627 | 109 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | HOXA11-AS1_6.1-201 | ENST00000620092 | 179 nt | BASIC | 0.56 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AL589743.1-201 | ENST00000551932 | 2712 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-1272P-201 | ENST00000362776 | 107 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | SNORD45.3-201 | ENST00000363836 | 72 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-770P-201 | ENST00000363929 | 105 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | Y_RNA.205-201 | ENST00000364128 | 113 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU4-10P-201 | ENST00000364383 | 140 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | RNU6-945P-201 | ENST00000383947 | 107 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | MT-TN-201 | ENST00000387400 | 73 nt | BASIC | 0.55 | □□□□□ -2.32 | | |
| APPL1 | Q9UKG1 | AC090844.1-201 | ENST00000422019 | 156 nt | BASIC | 0.55 | □□□□□ -2.32 | | |