Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MIR548AO-201ENST00000579992 96 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 AC022709.1-201ENST00000615967 87 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 MTND1P7-201ENST00000632801 297 ntBASIC0.84□□□□□ -2.27
CHMP4AQ9BY43 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.14-201ENST00000362415 103 ntBASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.28-201ENST00000362554 111 ntBASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 MTND5P15-201ENST00000434246 349 ntBASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 RNU6-988P-201ENST00000519081 107 ntBASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 DEFB108E-201ENST00000524692 240 ntBASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.83□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.105-201ENST00000363182 111 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.354-201ENST00000365448 111 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 RNU6-514P-201ENST00000384208 107 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 RNU6-474P-201ENST00000384243 107 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.509-201ENST00000384506 99 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 RNU6-847P-201ENST00000411115 108 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 RNU4-57P-201ENST00000515980 135 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 RNU7-25P-201ENST00000516544 62 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 AL049861.1-201ENST00000603130 150 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 AC013791.1-201ENST00000616619 62 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 AC243994.1-201ENST00000618627 109 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 MIR6515-201ENST00000619843 57 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 AL160413.1-201ENST00000622780 310 ntBASIC0.82□□□□□ -2.28
CHMP4AQ9BY43 MIR367-201ENST00000362299 68 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 SNORA25.1-201ENST00000362326 128 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.293-201ENST00000364908 93 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.637-201ENST00000459424 114 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.631-201ENST00000459607 101 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 RNY3P15-201ENST00000516297 97 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 RNU7-149P-201ENST00000516739 59 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 AP001094.1-201ENST00000579805 193 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 AC037487.3-201ENST00000606668 112 ntBASIC0.81□□□□□ -2.28
CHMP4AQ9BY43 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 RNY1-201ENST00000364228 113 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 RNU6-290P-201ENST00000365212 101 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.394-201ENST00000383942 103 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.547-201ENST00000384654 119 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 MIR613-201ENST00000385248 95 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.581-201ENST00000391017 97 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 MIR548O-201ENST00000408583 114 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 RNU6-121P-201ENST00000410525 99 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 AC107297.1-201ENST00000459991 176 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 MIR4714-201ENST00000580728 77 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 uc_338.4-201ENST00000616635 176 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 uc_338.17-201ENST00000619633 179 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 MIR7111-201ENST00000619751 72 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 AC022140.2-201ENST00000623500 188 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 MTND4P29-201ENST00000503122 1372 ntBASIC0.8□□□□□ -2.28
CHMP4AQ9BY43 SNORA53-201ENST00000391141 249 ntBASIC0.79□□□□□ -2.28
CHMP4AQ9BY43 BTF3P11-201ENST00000426582 477 ntBASIC0.79□□□□□ -2.28
CHMP4AQ9BY43 RN7SKP12-201ENST00000516275 143 ntBASIC0.79□□□□□ -2.28
CHMP4AQ9BY43 RNU2-31P-201ENST00000516954 155 ntBASIC0.79□□□□□ -2.28
CHMP4AQ9BY43 MIR5692C2-201ENST00000577959 77 ntBASIC0.79□□□□□ -2.28
CHMP4AQ9BY43 AC011195.1-201ENST00000578177 177 ntBASIC0.79□□□□□ -2.28
CHMP4AQ9BY43 RNU6-1272P-201ENST00000362776 107 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 RNU1-133P-201ENST00000364867 167 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 RNU6-662P-201ENST00000384253 104 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 Y_RNA.460-201ENST00000384255 102 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 RNU6-205P-201ENST00000390858 107 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 AC004812.1-201ENST00000540773 146 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 MIR4724-201ENST00000579485 89 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 AP000753.3-201ENST00000604083 169 ntBASIC0.78□□□□□ -2.28
CHMP4AQ9BY43 RNA5SP347-201ENST00000362445 119 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.241-201ENST00000364470 117 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.380-201ENST00000365663 111 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 MIR489-201ENST00000384923 84 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 RNA5SP496-201ENST00000391240 109 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 MTND4LP30-201ENST00000454092 297 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 AC091959.1-201ENST00000495857 238 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.666-201ENST00000516187 112 ntBASIC0.77□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.19-201ENST00000362462 99 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 RNU6-770P-201ENST00000363929 105 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 SNORA22B-201ENST00000383876 138 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.541-201ENST00000384640 113 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 MIR215-201ENST00000384858 110 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 RNA5SP222-201ENST00000411039 105 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 ELOCP20-201ENST00000422460 345 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 AC244098.3-201ENST00000424803 96 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 RNU7-67P-201ENST00000459003 62 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 AC131281.1-201ENST00000522984 164 ntBASIC0.76□□□□□ -2.29
CHMP4AQ9BY43 snoU2_19.2-201ENST00000363024 80 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.128-201ENST00000363391 112 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.210-201ENST00000364161 110 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 RNU6-945P-201ENST00000383947 107 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.527-201ENST00000384573 102 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 MIR598-201ENST00000384868 97 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 RPL21P38-201ENST00000418090 167 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 RNU2-13P-201ENST00000515909 113 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 AL021707.8-201ENST00000609428 183 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 MIR6513-201ENST00000621188 64 ntBASIC0.75□□□□□ -2.29
CHMP4AQ9BY43 Y_RNA.214-201ENST00000364201 112 ntBASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 RNU6-326P-201ENST00000365480 107 ntBASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 AC092628.1-201ENST00000436250 252 ntBASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 snoU13.21-201ENST00000459368 105 ntBASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 AC004817.2-201ENST00000561794 651 ntBASIC0.74□□□□□ -2.29
CHMP4AQ9BY43 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.74□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms