Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 SNRPGP14-201ENST00000435400 219 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 RPL39P38-201ENST00000467018 153 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 SCARNA8-201ENST00000515924 131 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 RNY3P16-201ENST00000516338 101 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 RNU7-40P-201ENST00000516397 64 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 SNORD45.4-201ENST00000516629 73 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 AC019176.1-201ENST00000518519 225 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 MIR3973-201ENST00000579824 107 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 AC211469.2-201ENST00000605461 205 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 AL021707.8-201ENST00000609428 183 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 AL365265.1-201ENST00000621045 234 ntBASIC0.85□□□□□ -2.27
RSPO3Q9BXY4 MIR373-201ENST00000362273 69 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 Y_RNA.20-201ENST00000362479 113 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 SNORD33-201ENST00000362761 85 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 RNU6-653P-201ENST00000363074 106 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 RNU6-833P-201ENST00000363486 107 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 MIR1298-201ENST00000408783 112 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 AC245047.8-201ENST00000456455 284 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 RNU6-453P-201ENST00000516819 85 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 RNU6-111P-201ENST00000517179 105 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 AC120024.3-201ENST00000603167 156 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 U6.104-201ENST00000637979 90 ntBASIC0.84□□□□□ -2.27
RSPO3Q9BXY4 Y_RNA.65-201ENST00000362846 100 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RNA5SP325-201ENST00000363756 130 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.292-201ENST00000364904 97 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RNY4P28-201ENST00000365281 93 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RNU6-163P-201ENST00000384396 106 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 MIR653-201ENST00000385279 96 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 SNORD41-201ENST00000386967 70 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 MT-TT-201ENST00000387460 66 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RNU6-131P-201ENST00000391144 107 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.590-201ENST00000410140 107 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RPL39P28-201ENST00000465655 155 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 CYCTP-201ENST00000504253 315 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 AC079140.2-201ENST00000506193 142 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RNA5SP404-201ENST00000517118 132 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 AC090142.3-201ENST00000519012 385 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 AC100767.1-201ENST00000528178 123 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 AL049861.1-201ENST00000603130 150 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 AC012676.2-201ENST00000619258 186 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 AC027279.3-201ENST00000625055 122 ntBASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
RSPO3Q9BXY4 RNU6-1084P-201ENST00000362498 107 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 RNU6-199P-201ENST00000362954 107 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.229-201ENST00000364347 113 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.304-201ENST00000365011 112 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 MIR532-201ENST00000385025 91 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 MIR526A2-201ENST00000390198 65 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 MIR891A-201ENST00000401237 79 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 RNU6-1023P-201ENST00000516137 106 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 RNU6-165P-201ENST00000517170 99 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 AC004817.2-201ENST00000561794 651 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 MIR4724-201ENST00000579485 89 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 RN7SL793P-201ENST00000583259 296 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 AC008507.4-201ENST00000585464 127 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 FAM71BP1-201ENST00000604431 523 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 AL442067.1-201ENST00000613261 223 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.802-201ENST00000614892 130 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 AC008133.2-201ENST00000624540 351 ntBASIC0.82□□□□□ -2.28
RSPO3Q9BXY4 RNU6-268P-201ENST00000364174 107 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 MIR516B2-201ENST00000385190 85 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 MIR548H3-201ENST00000408771 118 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 snoU13.25-201ENST00000458945 104 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 UBL5P1-201ENST00000507979 193 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 RNU6-561P-201ENST00000516222 102 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.679-201ENST00000516416 91 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 RNU6-922P-201ENST00000516753 99 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 BX284668.6-201ENST00000606899 438 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 JPX_2.1-201ENST00000614161 69 ntBASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.81□□□□□ -2.28
RSPO3Q9BXY4 MIR367-201ENST00000362299 68 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 RNU6-379P-201ENST00000363813 104 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 RNU1-133P-201ENST00000364867 167 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 snoU2-30.1-201ENST00000365012 70 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 SNORA2.2-201ENST00000365473 135 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.486-201ENST00000384398 107 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 SNORA8.3-201ENST00000384679 139 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.587-201ENST00000391210 103 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 Y_RNA.626-201ENST00000411288 95 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 SNRPGP8-201ENST00000454064 226 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 RNU7-149P-201ENST00000516739 59 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 AL512310.8-201ENST00000550183 120 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 CYP3A137P-201ENST00000562436 69 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 MIR4698-201ENST00000577795 80 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 MIR3664-201ENST00000579074 99 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 MIR4308-201ENST00000580634 81 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 MIR2681-201ENST00000581814 105 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 AC006006.1-201ENST00000603082 144 ntBASIC0.8□□□□□ -2.28
RSPO3Q9BXY4 uc_338.4-201ENST00000616635 176 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 134 ms