Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 SNORD115-36-201ENST00000365629 82 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 RNU1-109P-201ENST00000383960 147 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 MIR597-201ENST00000384968 97 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 RNU11-3P-201ENST00000391111 133 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 SNX2P2-201ENST00000424553 323 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 AC015922.2-201ENST00000435593 184 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 RNU7-96P-201ENST00000459535 64 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 SNORD115-40-201ENST00000606510 82 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 AP001318.4-201ENST00000616637 121 ntBASIC2.78□□□□□ -1.96
ZKSCAN3Q9BRR0 MIR342-201ENST00000362212 99 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 U8.6-201ENST00000364939 135 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 Y_RNA.348-201ENST00000365403 103 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU6-905P-201ENST00000384434 107 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR548D2-201ENST00000384955 97 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 MT-TI-201ENST00000387365 69 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 RNA5SP465-201ENST00000391195 109 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 RPPH1-2P-201ENST00000516688 293 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 AC068339.1-201ENST00000526965 141 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR5009-201ENST00000578736 100 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 AC007336.1-201ENST00000576365 3828 ntBASIC2.77□□□□□ -1.97
ZKSCAN3Q9BRR0 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 RNA5SP126-201ENST00000365092 109 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 Y_RNA.544-201ENST00000384650 113 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 U8.16-201ENST00000391279 133 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 RPS12P2-201ENST00000439728 269 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU6-998P-201ENST00000515894 101 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 IGLV3-17-201ENST00000519099 244 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 AC090821.2-201ENST00000523552 176 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR4513-201ENST00000581077 86 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 AC067747.1-201ENST00000608026 250 ntBASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
ZKSCAN3Q9BRR0 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR302B-201ENST00000362188 73 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU4-16P-201ENST00000364737 141 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU6-1104P-201ENST00000384723 104 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR1283-2-201ENST00000408621 87 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU2-35P-201ENST00000516446 142 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 RNA5SP168-201ENST00000516642 112 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 AC022523.2-201ENST00000561045 150 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 AC016717.2-201ENST00000609089 5141 ntBASIC2.75□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU6-640P-201ENST00000363693 105 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 Y_RNA.344-201ENST00000365381 112 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 DEFA7P-201ENST00000382676 285 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR1267-201ENST00000408723 78 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 RNA5SP508-201ENST00000411327 119 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 SNORA40.13-201ENST00000516379 120 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR3670-2-201ENST00000582974 65 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR3670-1-201ENST00000584160 65 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR3670-3-201ENST00000584855 65 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR3670-4-201ENST00000612260 65 ntBASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
ZKSCAN3Q9BRR0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 SNORA1.2-201ENST00000365189 134 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU6-1031P-201ENST00000384773 107 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU4-53P-201ENST00000410828 140 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 HMGN2P35-201ENST00000412164 270 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 AC107297.1-201ENST00000459991 176 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 RNU7-12P-201ENST00000516030 62 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 SNORD53-201ENST00000579969 78 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 HSPE1P19-201ENST00000603327 295 ntBASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.73□□□□□ -1.97
ZKSCAN3Q9BRR0 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 Y_RNA.78-201ENST00000362970 110 ntBASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR520A-201ENST00000384862 85 ntBASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR518A2-201ENST00000384966 87 ntBASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 MIR452-201ENST00000385020 85 ntBASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 HMGN2P3-201ENST00000433603 273 ntBASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 HMGN2P5-201ENST00000436882 273 ntBASIC2.72□□□□□ -1.97
ZKSCAN3Q9BRR0 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 SNORA4.2-201ENST00000365313 147 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 SNORA51.10-201ENST00000384418 136 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 SNORA48.1-201ENST00000390879 135 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 RNA5SP144-201ENST00000410846 116 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 AL022718.1-201ENST00000412004 84 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 RNU7-181P-201ENST00000517234 74 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 MIR4435-1-201ENST00000582552 80 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 Y_RNA.818-201ENST00000618813 71 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 AC021613.1-201ENST00000623880 111 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 AL162726.3-218ENST00000636401 95 ntBASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.71□□□□□ -1.98
ZKSCAN3Q9BRR0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
ZKSCAN3Q9BRR0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.7□□□□□ -1.98
ZKSCAN3Q9BRR0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.7□□□□□ -1.98
ZKSCAN3Q9BRR0 RNU2-7P-201ENST00000410794 178 ntBASIC2.7□□□□□ -1.98
ZKSCAN3Q9BRR0 RNU6-970P-201ENST00000516312 107 ntBASIC2.7□□□□□ -1.98
ZKSCAN3Q9BRR0 RNVU1-2-201ENST00000516326 135 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 215 ms