Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.1□□□□□ -2.23
CCDC3Q9BQI4 SNORA70.7-201ENST00000384159 133 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 MIR222-201ENST00000384992 110 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 MIR516B2-201ENST00000385190 85 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 RPS29P1-201ENST00000465274 159 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 RPS23P4-201ENST00000487908 423 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 RNU7-149P-201ENST00000516739 59 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 AC012433.1-201ENST00000588916 398 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 AC006006.1-201ENST00000603082 144 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 BX284668.6-201ENST00000606899 438 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 AC027335.2-201ENST00000624030 375 ntBASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.09□□□□□ -2.23
CCDC3Q9BQI4 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.09□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.117-201ENST00000363294 101 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.370-201ENST00000365589 108 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 SNORA25-201ENST00000384384 134 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 MIR520C-201ENST00000385005 87 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 MIR568-201ENST00000385036 95 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 AL591704.2-201ENST00000421658 181 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 SNORA31.2-201ENST00000516019 134 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 SNORA70.22-201ENST00000517160 124 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 MIR4764-201ENST00000580680 88 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 AL022345.2-201ENST00000606307 135 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 MIR6767-201ENST00000637302 66 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 AC099654.10-201ENST00000640395 161 ntBASIC1.08□□□□□ -2.24
CCDC3Q9BQI4 RNU1-124P-201ENST00000363861 145 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 RNA5SP48-201ENST00000363969 126 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 SNORA25.8-201ENST00000364831 128 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.478-201ENST00000384358 107 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.590-201ENST00000410140 107 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 AC048334.1-201ENST00000477975 159 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 RN7SKP164-201ENST00000516138 266 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 MIR3192-201ENST00000584920 77 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 AL353621.2-201ENST00000605340 133 ntBASIC1.07□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.229-201ENST00000364347 113 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 SNORA1.2-201ENST00000365189 134 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 SNORD24-201ENST00000383884 75 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.416-201ENST00000384014 113 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 SNORA80D-201ENST00000384488 135 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 RNU6-1067P-201ENST00000384752 107 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 MIR19B1-201ENST00000384829 87 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.587-201ENST00000391210 103 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 MIR1285-1-201ENST00000408593 84 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 MTND3P2-201ENST00000438452 342 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 RNU6-1132P-201ENST00000459214 107 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 OR2A41P-201ENST00000473586 105 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 RNU4-57P-201ENST00000515980 135 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 SNORD79.1-201ENST00000516069 84 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 RNU11-2P-201ENST00000516898 142 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 SNORA18.7-201ENST00000516910 131 ntBASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.06□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.24-201ENST00000362508 103 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.537-201ENST00000384626 109 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 MIR616-201ENST00000385293 97 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 RNU6-1228P-201ENST00000391014 107 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 SNORA26-201ENST00000391286 122 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 U8.17-201ENST00000391292 132 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 snoU13.25-201ENST00000458945 104 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 RNU2-13P-201ENST00000515909 113 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 RNU6-947P-201ENST00000516264 106 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 RNA5SP153-201ENST00000516498 76 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 RNU6-113P-201ENST00000516653 101 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 RNA5SP404-201ENST00000517118 132 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 MIR548AR-201ENST00000582191 57 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 AL049861.1-201ENST00000603130 150 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 AC097639.2-201ENST00000603159 172 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 AC011921.3-201ENST00000605540 361 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 U4.1-201ENST00000620349 87 ntBASIC1.05□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.20-201ENST00000362479 113 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 RNU6-653P-201ENST00000363074 106 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 RNA5SP264-201ENST00000363115 107 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.363-201ENST00000365529 113 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 RNU6-651P-201ENST00000411040 105 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 AC087499.4-201ENST00000448505 178 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.679-201ENST00000516416 91 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 MIR4643-201ENST00000577473 78 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 AL442067.1-201ENST00000613261 223 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 AC022709.1-201ENST00000615967 87 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 MIR6788-201ENST00000618842 66 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 AL365265.1-201ENST00000621045 234 ntBASIC1.04□□□□□ -2.24
CCDC3Q9BQI4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.193-201ENST00000363979 102 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 RNY1-201ENST00000364228 113 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.262-201ENST00000364641 102 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 Y_RNA.547-201ENST00000384654 119 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 RNU6-910P-201ENST00000390844 107 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 RNU2-38P-201ENST00000410856 79 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 RPS26P48-201ENST00000491713 339 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 MIR151B-201ENST00000584249 96 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 AC062037.2-201ENST00000610137 73 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 AC008133.2-201ENST00000624540 351 ntBASIC1.03□□□□□ -2.24
CCDC3Q9BQI4 RNU4-10P-201ENST00000364383 140 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 198.4 ms