Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 MIR504-201ENST00000385065 83 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 AL603914.1-201ENST00000401964 204 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 RNU2-51P-201ENST00000410708 197 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 snoU13.27-201ENST00000459278 104 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.2□□□□□ -2.06
ERCC4Q92889 RNA5SP236-201ENST00000516169 116 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 RNU6-62P-201ENST00000516526 102 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 RNU7-25P-201ENST00000516544 62 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 MIR376A2-201ENST00000636782 80 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 MIR219B-201ENST00000637023 88 ntBASIC2.2□□□□□ -2.06
ERCC4Q92889 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
ERCC4Q92889 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.19□□□□□ -2.06
ERCC4Q92889 Y_RNA.71-201ENST00000362892 104 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 RNU6-80P-201ENST00000384195 107 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 RNU6-163P-201ENST00000384396 106 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 MIR802-201ENST00000390235 94 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 RNU6-830P-201ENST00000516353 107 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 MIR3121-201ENST00000579680 77 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.19□□□□□ -2.06
ERCC4Q92889 AL365222.1-201ENST00000614661 98 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 AC134878.1-201ENST00000619901 243 ntBASIC2.19□□□□□ -2.06
ERCC4Q92889 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
ERCC4Q92889 SNORD116-14-201ENST00000383894 92 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 SNORD116-17-201ENST00000383929 92 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 Y_RNA.410-201ENST00000383992 113 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 SNORD116-15-201ENST00000384445 92 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 SNORD116-19-201ENST00000384729 92 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 RNU2-7P-201ENST00000410794 178 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 RNU6-938P-201ENST00000411285 103 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 RPL31P63-201ENST00000422565 375 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 AC008267.6-201ENST00000441664 139 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 snoU13.26-201ENST00000459452 105 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 SCARNA15-202ENST00000516881 127 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 SNORA31.17-201ENST00000516953 127 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 MIR4709-201ENST00000577272 72 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 MIR5197-201ENST00000583721 112 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 AL513423.1-201ENST00000621695 132 ntBASIC2.18□□□□□ -2.06
ERCC4Q92889 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
ERCC4Q92889 Y_RNA.127-201ENST00000363386 109 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 SNORD115-28-201ENST00000363931 81 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 RNU6-360P-201ENST00000390944 104 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 AL445646.1-201ENST00000431784 216 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 RNU6-1211P-201ENST00000459179 105 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 snoU13.15-201ENST00000459407 104 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 RNU4-57P-201ENST00000515980 135 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 MIR548AI-201ENST00000579940 88 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 AL773524.1-201ENST00000614065 229 ntBASIC2.17□□□□□ -2.06
ERCC4Q92889 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.17□□□□□ -2.06
ERCC4Q92889 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
ERCC4Q92889 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
ERCC4Q92889 Y_RNA.37-201ENST00000362606 108 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 SNORA22C-201ENST00000384614 134 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 RNA5SP212-201ENST00000391223 107 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 RNA5SP489-201ENST00000410986 109 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 AC244636.1-201ENST00000421152 228 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 HMGN2P19-201ENST00000425149 265 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.16□□□□□ -2.06
ERCC4Q92889 AC003989.2-201ENST00000440224 169 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 RPL23AP6-201ENST00000446637 472 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 RNU6-237P-201ENST00000515985 71 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 Y_RNA.692-201ENST00000516627 105 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 MIR4299-201ENST00000577899 72 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 AC011603.4-201ENST00000611325 277 ntBASIC2.16□□□□□ -2.06
ERCC4Q92889 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
ERCC4Q92889 MTND5P32-201ENST00000560711 1802 ntBASIC2.15□□□□□ -2.06
ERCC4Q92889 MIR660-201ENST00000385235 97 ntBASIC2.15□□□□□ -2.07
ERCC4Q92889 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.15□□□□□ -2.07
ERCC4Q92889 AC015922.2-201ENST00000435593 184 ntBASIC2.15□□□□□ -2.07
ERCC4Q92889 RNU6-313P-201ENST00000516317 112 ntBASIC2.15□□□□□ -2.07
ERCC4Q92889 RNU6-1234P-201ENST00000516877 103 ntBASIC2.15□□□□□ -2.07
ERCC4Q92889 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.15□□□□□ -2.07
ERCC4Q92889 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.15□□□□□ -2.07
ERCC4Q92889 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.15□□□□□ -2.07
ERCC4Q92889 MIR7843-201ENST00000622274 79 ntBASIC2.15□□□□□ -2.07
ERCC4Q92889 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
ERCC4Q92889 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.15□□□□□ -2.07
ERCC4Q92889 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.14□□□□□ -2.07
ERCC4Q92889 SNORD114-1-201ENST00000362705 72 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 RNA5SP205-201ENST00000364653 136 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 SNORD38C-201ENST00000384381 69 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 RNU6-1154P-201ENST00000391001 104 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 AC087499.4-201ENST00000448505 178 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 Y_RNA.651-201ENST00000459380 103 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 RNU7-34P-201ENST00000459394 64 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 RPL23AP42-201ENST00000471152 471 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 RNU7-12P-201ENST00000516030 62 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 RNU6-659P-201ENST00000516454 104 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 Y_RNA.690-201ENST00000516603 95 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
ERCC4Q92889 MIR3122-201ENST00000577243 73 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 Y_RNA.757-201ENST00000578934 114 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.14□□□□□ -2.07
ERCC4Q92889 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.14□□□□□ -2.07
ERCC4Q92889 MIR424-201ENST00000362227 98 ntBASIC2.13□□□□□ -2.07
ERCC4Q92889 RNA5SP432-201ENST00000362480 116 ntBASIC2.13□□□□□ -2.07
ERCC4Q92889 RNU6-508P-201ENST00000363231 103 ntBASIC2.13□□□□□ -2.07
ERCC4Q92889 RNU6-309P-201ENST00000364573 106 ntBASIC2.13□□□□□ -2.07
ERCC4Q92889 Y_RNA.294-201ENST00000364916 102 ntBASIC2.13□□□□□ -2.07
ERCC4Q92889 RNU6-1189P-201ENST00000383958 107 ntBASIC2.13□□□□□ -2.07
ERCC4Q92889 MIR194-1-201ENST00000384892 85 ntBASIC2.13□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 246 ms