Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RNU6-653P-201ENST00000363074 106 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.350-201ENST00000365409 98 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 SNORA2.2-201ENST00000365473 135 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-1248P-201ENST00000391096 64 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 RNA5SP482-201ENST00000391269 118 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 AC024067.1-201ENST00000426199 223 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 AC002429.1-201ENST00000437672 148 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 AC093850.1-201ENST00000454121 251 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 AC245047.8-201ENST00000456455 284 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 RPL23AP54-201ENST00000495129 419 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-917P-201ENST00000516294 104 ntBASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.92□□□□□ -2.26
ZNF540Q8NDQ6 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 RNY1-201ENST00000364228 113 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 snoU2_19.4-201ENST00000364329 80 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.265-201ENST00000364677 108 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 RNU1-93P-201ENST00000364704 169 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 SNORD50B-201ENST00000364995 70 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 Y_RNA.304-201ENST00000365011 112 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 RNU6-514P-201ENST00000384208 107 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 SCARNA8-201ENST00000515924 131 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 AC004817.2-201ENST00000561794 651 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 MIR4778-201ENST00000577635 80 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 MIR4653-201ENST00000585107 83 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 FAM106DP-201ENST00000586416 501 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 AC120024.3-201ENST00000603167 156 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 AC037487.3-201ENST00000606668 112 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 MIR7111-201ENST00000619751 72 ntBASIC0.91□□□□□ -2.26
ZNF540Q8NDQ6 SNORD27-201ENST00000363981 72 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 RNY4P28-201ENST00000365281 93 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 SNORD41-201ENST00000386967 70 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 MIR526A2-201ENST00000390198 65 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 SNORD72-201ENST00000390994 80 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 MIR1302-3-201ENST00000408128 138 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 PIGPP3-201ENST00000425307 415 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AC114811.1-201ENST00000507207 168 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-1023P-201ENST00000516137 106 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-111P-201ENST00000517179 105 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AC090142.3-201ENST00000519012 385 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 AL442067.1-201ENST00000613261 223 ntBASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.9□□□□□ -2.27
ZNF540Q8NDQ6 SNORD68-201ENST00000363214 84 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-833P-201ENST00000363486 107 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-1205P-201ENST00000363625 106 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-144P-201ENST00000383951 107 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 MIR626-201ENST00000385032 94 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 MIR548H3-201ENST00000408771 118 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.621-201ENST00000411065 96 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 ACA64.5-201ENST00000516207 127 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-947P-201ENST00000516264 106 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 RPL23AP91-201ENST00000569211 455 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 AC008507.4-201ENST00000585464 127 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 AL365265.1-201ENST00000621045 234 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 AC027279.3-201ENST00000625055 122 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 U6.104-201ENST00000637979 90 ntBASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
ZNF540Q8NDQ6 MIR96-201ENST00000362288 78 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.54-201ENST00000362766 105 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.229-201ENST00000364347 113 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.292-201ENST00000364904 97 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 MT-TG-201ENST00000387429 68 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-381P-201ENST00000391259 108 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.590-201ENST00000410140 107 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 snoU13.25-201ENST00000458945 104 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 SNORD124-201ENST00000459577 104 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 CYCTP-201ENST00000504253 315 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 RNY3P16-201ENST00000516338 101 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 SNORD45.4-201ENST00000516629 73 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-453P-201ENST00000516819 85 ntBASIC0.88□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.24-201ENST00000362508 103 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-379P-201ENST00000363813 104 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 RNU4-38P-201ENST00000364472 129 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 MT-TT-201ENST00000387460 66 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 PSMC1P5-201ENST00000512850 177 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-1223P-201ENST00000517124 104 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 MIR4308-201ENST00000580634 81 ntBASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
ZNF540Q8NDQ6 SNORD114-27-201ENST00000363766 70 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.293-201ENST00000364908 93 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.478-201ENST00000384358 107 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR520E-201ENST00000384867 87 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR548A2-201ENST00000384956 97 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR942-201ENST00000401111 86 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR1298-201ENST00000408783 112 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 Y_RNA.626-201ENST00000411288 95 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 RNU7-12P-201ENST00000516030 62 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 SNORD77.4-201ENST00000516158 81 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 RNU6-561P-201ENST00000516222 102 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR4724-201ENST00000579485 89 ntBASIC0.86□□□□□ -2.27
ZNF540Q8NDQ6 MIR151B-201ENST00000584249 96 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 138.2 ms