Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC244023.1-201ENST00000426884 112 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 MTND1P14-201ENST00000427400 950 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 RNU7-62P-201ENST00000458856 62 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 MIR4804-201ENST00000581683 73 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 AC242498.1-201ENST00000604134 111 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 AC134878.1-201ENST00000619901 243 ntBASIC0.33□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.142-201ENST00000363491 102 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.143-201ENST00000363520 106 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.526-201ENST00000384572 110 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 RNU7-67P-201ENST00000459003 62 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 U8.20-201ENST00000459445 131 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 RNU2-13P-201ENST00000515909 113 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 RNU7-25P-201ENST00000516544 62 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 MIR4676-201ENST00000583078 72 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 AL355297.3-201ENST00000604082 446 ntBASIC0.32□□□□□ -2.36
HDDC3Q8N4P3 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 SNORA63C-201ENST00000364578 129 ntBASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 RNU2-14P-201ENST00000411053 191 ntBASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 AC236972.2-201ENST00000434979 310 ntBASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 RNA5SP476-201ENST00000516613 103 ntBASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 LARP7P1-201ENST00000605576 316 ntBASIC0.31□□□□□ -2.36
HDDC3Q8N4P3 RNU4-50P-201ENST00000364361 141 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.241-201ENST00000364470 117 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 MIR548O-201ENST00000408583 114 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.619-201ENST00000410951 90 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 RNU6-277P-201ENST00000516272 106 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 SNORA18.4-201ENST00000516440 124 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 SNORA40.14-201ENST00000516543 86 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 SNORA20.3-201ENST00000516880 132 ntBASIC0.3□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.187-201ENST00000363918 113 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.547-201ENST00000384654 119 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 RNU6-679P-201ENST00000391003 106 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 SNORD71-201ENST00000411292 86 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 TRBVB-201ENST00000477100 408 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 SEPT14P8-201ENST00000508026 178 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 SNORD113-5-201ENST00000607261 78 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 AL606534.2-204ENST00000635008 178 ntBASIC0.29□□□□□ -2.36
HDDC3Q8N4P3 RNU6-899P-201ENST00000363947 107 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 RNU6-801P-201ENST00000364087 105 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.274-201ENST00000364714 101 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 Y_RNA.471-201ENST00000384312 102 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 MIR938-201ENST00000401216 83 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 SNORA25.12-201ENST00000516202 82 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 RNU4-77P-201ENST00000516692 156 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 AP003327.1-201ENST00000529684 127 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.28□□□□□ -2.36
HDDC3Q8N4P3 RNU6-1115P-201ENST00000362490 106 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1205P-201ENST00000363625 106 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 RNU1-115P-201ENST00000365329 160 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.496-201ENST00000384444 101 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 SNORA26.5-201ENST00000391215 123 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 AC138393.2-201ENST00000414742 246 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 AC090844.1-201ENST00000422019 156 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 AC020891.4-201ENST00000605745 93 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 AC104985.2-201ENST00000620598 500 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 AC099654.14-201ENST00000638599 341 ntBASIC0.27□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-34-201ENST00000362441 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-12-201ENST00000362583 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-29-201ENST00000362834 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-9-201ENST00000362912 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-21-201ENST00000362963 81 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-14-201ENST00000363090 81 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-13-201ENST00000363358 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-41-201ENST00000363608 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-11-201ENST00000363616 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-5-201ENST00000363633 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-39-201ENST00000363694 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-4-201ENST00000363810 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-16-201ENST00000363887 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-6-201ENST00000363942 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-42-201ENST00000364273 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-15-201ENST00000364809 81 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 Y_RNA.294-201ENST00000364916 102 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-1-201ENST00000364961 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-26-201ENST00000365067 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-10-201ENST00000365073 81 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-43-201ENST00000365503 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-36-201ENST00000365629 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 RNU6-364P-201ENST00000384387 107 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD38B-201ENST00000384690 67 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 RNU7-56P-201ENST00000458744 62 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 HAR1A.1-201ENST00000459583 118 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 RNU7-149P-201ENST00000516739 59 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 RNU6-958P-201ENST00000516995 106 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD115-40-201ENST00000606510 82 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 SNORD38B-202ENST00000625943 69 ntBASIC0.26□□□□□ -2.37
HDDC3Q8N4P3 AC010332.2-201ENST00000613083 1904 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 RNU6-144P-201ENST00000383951 107 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 SNORA24-201ENST00000384096 131 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 RNU6-308P-201ENST00000390957 107 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 RNU6-1170P-201ENST00000515974 106 ntBASIC0.25□□□□□ -2.37
HDDC3Q8N4P3 AL132765.2-201ENST00000610812 351 ntBASIC0.25□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms