Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SNORD116-3-201ENST00000384287 95 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 Y_RNA.475-201ENST00000384345 101 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 SNORD116-8-201ENST00000384365 95 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 SNORD116-7-201ENST00000384404 95 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 SNORD116-5-201ENST00000384462 95 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 RNU6-900P-201ENST00000384498 102 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-1.03□□□□□ -2.57
USF3Q68DE3 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC016550.1-201ENST00000505348 785 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC107027.2-201ENST00000512197 115 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 SNORA19.2-201ENST00000516013 114 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 RNU6-1114P-201ENST00000516022 107 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 OSBPL9P5-201ENST00000542581 171 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 MIR4770-201ENST00000579149 58 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 AC011373.1-201ENST00000607270 237 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 AL512506.1-201ENST00000613918 449 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 Y_RNA.802-201ENST00000614892 130 ntBASIC-1.03□□□□□ -2.57
USF3Q68DE3 RNU5F-6P-201ENST00000362979 116 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU6-82P-201ENST00000363970 107 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU6-865P-201ENST00000364772 107 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 SNORA27-201ENST00000384323 126 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU6-606P-201ENST00000384721 111 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RPS29P24-201ENST00000486345 171 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU6-175P-201ENST00000516896 107 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 MTND4P7-201ENST00000523876 130 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 AL137161.1-201ENST00000532231 390 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 AC018714.1-201ENST00000605028 208 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 AC092807.2-201ENST00000609367 243 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 MIR1246-201ENST00000636535 73 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 Y_RNA.151-201ENST00000363566 112 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU6-226P-201ENST00000363778 107 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 SNORA72.6-201ENST00000384520 129 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 MIR518B-201ENST00000385127 83 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU4-83P-201ENST00000410863 133 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 AC007012.1-201ENST00000567192 175 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 MIR4520-1-201ENST00000582609 70 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 AC124312.5-201ENST00000604451 268 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 AC072046.2-201ENST00000618366 268 ntBASIC-1.04□□□□□ -2.58
USF3Q68DE3 RNU4-58P-201ENST00000363192 141 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNA5SP245-201ENST00000364239 121 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 SNORA40.5-201ENST00000391061 128 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 MIR548I3-201ENST00000408378 149 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 AC016907.1-201ENST00000419483 435 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU6-966P-201ENST00000516479 104 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU7-188P-201ENST00000517063 64 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU6-169P-201ENST00000365336 107 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU6-1329P-201ENST00000365664 107 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 RNU6-905P-201ENST00000384434 107 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 MTND3P1-201ENST00000441336 220 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-1.05□□□□□ -2.58
USF3Q68DE3 AL133173.2-201ENST00000614270 90 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 AL158063.1-201ENST00000615349 536 ntBASIC-1.05□□□□□ -2.58
USF3Q68DE3 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 RNU6-291P-201ENST00000384720 107 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 RNA5SP237-201ENST00000410414 113 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 RNA5SP475-201ENST00000410568 110 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 MTND3P21-201ENST00000433774 331 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 NDUFAF4P4-201ENST00000454883 502 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 RNU6-998P-201ENST00000515894 101 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 AP000676.1-201ENST00000533307 52 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 MIR4473-201ENST00000583731 91 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 DISC2.1-201ENST00000612827 205 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 MIR6854-201ENST00000614935 69 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 5S_rRNA.13-201ENST00000622298 123 ntBASIC-1.06□□□□□ -2.58
USF3Q68DE3 RNU4-28P-201ENST00000364739 141 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 RNU6-1145P-201ENST00000384246 107 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 SNORD72-201ENST00000390994 80 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 Y_RNA.587-201ENST00000391210 103 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-1.07□□□□□ -2.58
USF3Q68DE3 RNU7-55P-201ENST00000459426 62 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 MTCO2P30-201ENST00000503662 364 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 AC134698.4-201ENST00000523451 826 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 MIR5696-201ENST00000578474 85 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 MIR5583-1-201ENST00000580941 59 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-1.07□□□□□ -2.58
USF3Q68DE3 MIR5188-201ENST00000583467 113 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 Z84480.1-201ENST00000605131 311 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 AC009161.2-201ENST00000624626 138 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.07□□□□□ -2.58
USF3Q68DE3 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 RNU6-533P-201ENST00000384144 107 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 RNU6-370P-201ENST00000411008 104 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 FCF1P4-201ENST00000448326 183 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 SNORA25.13-201ENST00000516395 103 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 POLR3GP2-201ENST00000588366 668 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 AC011603.4-201ENST00000611325 277 ntBASIC-1.07□□□□□ -2.58
USF3Q68DE3 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 RNU6-576P-201ENST00000390854 102 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 EIF1P2-201ENST00000428233 350 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 MIR5692C1-201ENST00000585309 91 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 Y_RNA.172-201ENST00000363765 102 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 Y_RNA.547-201ENST00000384654 119 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 Y_RNA.562-201ENST00000384695 113 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 RNU2-9P-201ENST00000410194 145 ntBASIC-1.08□□□□□ -2.58
USF3Q68DE3 MTCO2P21-201ENST00000419780 677 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms