Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SNORA31.11-201ENST00000516528 139 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 RNU1-142P-201ENST00000516682 145 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 AP002004.2-201ENST00000531656 154 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.28□□□□□ -2.04
USP39Q53GS9 AC022217.4-201ENST00000604389 163 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 AL355297.2-201ENST00000604792 129 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.28□□□□□ -2.04
USP39Q53GS9 AC134878.1-201ENST00000619901 243 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 AC092881.1-201ENST00000638218 2733 ntBASIC2.28□□□□□ -2.04
USP39Q53GS9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
USP39Q53GS9 RNU6-268P-201ENST00000364174 107 ntBASIC2.27□□□□□ -2.05
USP39Q53GS9 Y_RNA.242-201ENST00000364473 110 ntBASIC2.27□□□□□ -2.05
USP39Q53GS9 U8.5-201ENST00000364528 136 ntBASIC2.27□□□□□ -2.05
USP39Q53GS9 RNU6-938P-201ENST00000411285 103 ntBASIC2.27□□□□□ -2.05
USP39Q53GS9 RNU1-131P-201ENST00000458943 161 ntBASIC2.27□□□□□ -2.05
USP39Q53GS9 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.26□□□□□ -2.05
USP39Q53GS9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.26□□□□□ -2.05
USP39Q53GS9 Y_RNA.37-201ENST00000362606 108 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 Y_RNA.49-201ENST00000362714 112 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 Y_RNA.99-201ENST00000363138 105 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 RNU6-1131P-201ENST00000364955 107 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 RNU6-294P-201ENST00000364999 102 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 SNORA2.2-201ENST00000365473 135 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 MIR488-201ENST00000365739 83 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 Y_RNA.547-201ENST00000384654 119 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 SNORA64-201ENST00000384674 134 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 MIR221-201ENST00000385135 110 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 SRIP3-201ENST00000413200 219 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 AL603825.1-201ENST00000438481 80 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 ATP5J2P3-201ENST00000451550 258 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 AL163195.1-201ENST00000496941 348 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.26□□□□□ -2.05
USP39Q53GS9 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 SNORD36C-201ENST00000516733 66 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 Y_RNA.714-201ENST00000517065 90 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 AC002984.1-201ENST00000591692 448 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 MIR6132-201ENST00000622083 109 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 ZNF720P1-201ENST00000562403 1939 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.26□□□□□ -2.05
USP39Q53GS9 AL589743.1-201ENST00000551932 2712 ntBASIC2.26□□□□□ -2.05
USP39Q53GS9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.25□□□□□ -2.05
USP39Q53GS9 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
USP39Q53GS9 RNY4P6-201ENST00000363667 96 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 SNORD115-28-201ENST00000363931 81 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 SNORA25B-201ENST00000365507 128 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 Y_RNA.388-201ENST00000383919 113 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 RNU6-1189P-201ENST00000383958 107 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 SNORA8-201ENST00000384574 139 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 RNU6-440P-201ENST00000390882 105 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 MIR1262-201ENST00000408276 93 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 AL606517.2-201ENST00000442855 241 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 RNA5SP458-201ENST00000516188 119 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 SNORA31.25-201ENST00000517242 134 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 MIR5009-201ENST00000578736 100 ntBASIC2.25□□□□□ -2.05
USP39Q53GS9 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
USP39Q53GS9 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
USP39Q53GS9 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
USP39Q53GS9 SNORD68-201ENST00000363214 84 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 Y_RNA.298-201ENST00000364960 107 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-690P-201ENST00000365242 106 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-442P-201ENST00000383968 104 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 Y_RNA.440-201ENST00000384120 114 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-1104P-201ENST00000384723 104 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 MIR590-201ENST00000385008 97 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 SNORA19.1-201ENST00000410656 129 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 AC099677.2-201ENST00000436385 175 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-109P-201ENST00000516364 107 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 SNORA40.13-201ENST00000516379 120 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-184P-201ENST00000516514 107 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-762P-201ENST00000517107 102 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 AC024995.1-201ENST00000523014 93 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
USP39Q53GS9 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.24□□□□□ -2.05
USP39Q53GS9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.24□□□□□ -2.05
USP39Q53GS9 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.24□□□□□ -2.05
USP39Q53GS9 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.24□□□□□ -2.05
USP39Q53GS9 RNU6-862P-201ENST00000362804 105 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 SNORA16B-201ENST00000364674 135 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 Y_RNA.344-201ENST00000365381 112 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 MIR17-201ENST00000385012 84 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 RNA5SP323-201ENST00000391094 133 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 RNY4P29-201ENST00000410801 97 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.23□□□□□ -2.05
USP39Q53GS9 CST2P1-201ENST00000425770 87 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 RNU7-94P-201ENST00000459576 63 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 AC055731.1-201ENST00000474387 401 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 RPS27P21-201ENST00000486977 252 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 RNU7-123P-201ENST00000515911 60 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 RNU2-19P-201ENST00000517288 84 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 SUMO2P16-201ENST00000519475 264 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 AC068339.1-201ENST00000526965 141 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 MIR3126-201ENST00000577443 74 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 MIR6766-201ENST00000622641 72 ntBASIC2.23□□□□□ -2.05
USP39Q53GS9 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP39Q53GS9 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
USP39Q53GS9 RNU6-414P-201ENST00000363705 104 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 Y_RNA.213-201ENST00000364178 111 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 RNY1P6-201ENST00000384193 109 ntBASIC2.22□□□□□ -2.05
USP39Q53GS9 SNORA67.3-201ENST00000384366 140 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 261.4 ms