Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RPS29P11-201ENST00000496507 171 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.08□□□□□ -2.08
SF3A1Q15459 RN7SKP88-201ENST00000516847 250 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 RNU7-181P-201ENST00000517234 74 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 MRPS18CP4-201ENST00000535821 231 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 7SK.8-201ENST00000612110 250 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 7SK.11-201ENST00000615477 250 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 7SK.13-201ENST00000622040 250 ntBASIC2.08□□□□□ -2.08
SF3A1Q15459 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
SF3A1Q15459 Y_RNA.66-201ENST00000362862 102 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 RNU6-888P-201ENST00000363010 101 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 SNORD115-28-201ENST00000363931 81 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 Y_RNA.338-201ENST00000365320 114 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 Y_RNA.785-201ENST00000384290 109 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 MIR520C-201ENST00000385005 87 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SF3A1Q15459 AC006461.1-201ENST00000412637 326 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 RNU6-830P-201ENST00000516353 107 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 RNU6-182P-201ENST00000516970 105 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 AL160236.1-201ENST00000556317 195 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 AC024614.2-201ENST00000577584 372 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 MIR3664-201ENST00000579074 99 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 AC097639.2-201ENST00000603159 172 ntBASIC2.07□□□□□ -2.08
SF3A1Q15459 MIR583-201ENST00000384846 75 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 MIR518F-201ENST00000384973 87 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 MIR9-3-201ENST00000385084 90 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.06□□□□□ -2.08
SF3A1Q15459 RNU7-120P-201ENST00000459334 63 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 RNU6-861P-201ENST00000516745 106 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 MIR3618-201ENST00000580330 88 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 TP73-AS1.1-201ENST00000611447 161 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 AC004792.1-201ENST00000614523 137 ntBASIC2.06□□□□□ -2.08
SF3A1Q15459 RNU4-57P-201ENST00000515980 135 ntBASIC2.05□□□□□ -2.08
SF3A1Q15459 RNU7-43P-201ENST00000516554 64 ntBASIC2.05□□□□□ -2.08
SF3A1Q15459 Y_RNA.23-201ENST00000362496 106 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 SNORD48-201ENST00000364953 64 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 SNORA1.2-201ENST00000365189 134 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 MIR548A2-201ENST00000384956 97 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SF3A1Q15459 SEPT7P4-201ENST00000437076 306 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 AC007751.1-201ENST00000529260 376 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 CYP3A52P-201ENST00000563326 91 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 MIR3122-201ENST00000577243 73 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 MIR4431-201ENST00000579990 94 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 MIR4764-201ENST00000580680 88 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 MIR3668-201ENST00000582138 75 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 AP000942.3-201ENST00000603702 160 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 MIR6845-201ENST00000613182 61 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 AL161722.3-201ENST00000605789 2983 ntBASIC2.04□□□□□ -2.08
SF3A1Q15459 RNU1-17P-201ENST00000363022 152 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 Y_RNA.241-201ENST00000364470 117 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 SNORD28B-201ENST00000390993 75 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 Y_RNA.662-201ENST00000516028 97 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 SNORD116-25-201ENST00000516517 92 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 MIR378D2-201ENST00000580636 98 ntBASIC2.03□□□□□ -2.08
SF3A1Q15459 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SF3A1Q15459 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC2.03□□□□□ -2.08
SF3A1Q15459 RNU6-312P-201ENST00000364629 107 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 Y_RNA.370-201ENST00000365589 108 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 Y_RNA.521-201ENST00000384560 114 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 RNU6-1067P-201ENST00000384752 107 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 RNA5SP247-201ENST00000411181 105 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.02□□□□□ -2.09
SF3A1Q15459 AC107027.2-201ENST00000512197 115 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 MIR548AR-201ENST00000582191 57 ntBASIC2.02□□□□□ -2.09
SF3A1Q15459 Y_RNA.164-201ENST00000363709 102 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 Y_RNA.357-201ENST00000365487 109 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 SNORA40.18-201ENST00000391200 128 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 CYCSP49-201ENST00000420810 319 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 RNA5SP182-201ENST00000516064 82 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 RNU6-970P-201ENST00000516312 107 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 AC134878.1-201ENST00000619901 243 ntBASIC2.01□□□□□ -2.09
SF3A1Q15459 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.01□□□□□ -2.09
SF3A1Q15459 AL442644.1-201ENST00000454390 3105 ntBASIC2□□□□□ -2.09
SF3A1Q15459 Y_RNA.37-201ENST00000362606 108 ntBASIC2□□□□□ -2.09
SF3A1Q15459 MIR570-201ENST00000384917 97 ntBASIC2□□□□□ -2.09
SF3A1Q15459 AC087499.4-201ENST00000448505 178 ntBASIC2□□□□□ -2.09
SF3A1Q15459 AC107297.1-201ENST00000459991 176 ntBASIC2□□□□□ -2.09
SF3A1Q15459 RNU6-165P-201ENST00000517170 99 ntBASIC2□□□□□ -2.09
SF3A1Q15459 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2□□□□□ -2.09
SF3A1Q15459 MIR3129-201ENST00000581095 76 ntBASIC2□□□□□ -2.09
SF3A1Q15459 AL096861.1-201ENST00000610899 123 ntBASIC2□□□□□ -2.09
SF3A1Q15459 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2□□□□□ -2.09
SF3A1Q15459 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2□□□□□ -2.09
SF3A1Q15459 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2□□□□□ -2.09
SF3A1Q15459 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2□□□□□ -2.09
SF3A1Q15459 RNU6-682P-201ENST00000363843 106 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 SNORA1-201ENST00000384107 130 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.99□□□□□ -2.09
SF3A1Q15459 AC108729.3-201ENST00000513484 108 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 AC090821.2-201ENST00000523552 176 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 AP003484.1-201ENST00000530974 250 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.99□□□□□ -2.09
SF3A1Q15459 MIR8065-201ENST00000620577 100 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 AC008133.2-201ENST00000624540 351 ntBASIC1.99□□□□□ -2.09
SF3A1Q15459 Y_RNA.4-201ENST00000362333 112 ntBASIC1.98□□□□□ -2.09
SF3A1Q15459 Y_RNA.240-201ENST00000364469 95 ntBASIC1.98□□□□□ -2.09
SF3A1Q15459 AF228730.3-201ENST00000436691 102 ntBASIC1.98□□□□□ -2.09
SF3A1Q15459 RNU7-41P-201ENST00000515917 61 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms