Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 HMGN1P33-201ENST00000432945 451 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 AC087499.4-201ENST00000448505 178 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU7-62P-201ENST00000458856 62 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU6-559P-201ENST00000516151 98 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 SNORA18.4-201ENST00000516440 124 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 SNORA40.14-201ENST00000516543 86 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.11□□□□□ -2.39
FOXF1Q12946 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.11□□□□□ -2.39
FOXF1Q12946 AC090897.1-201ENST00000580909 226 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 AC005357.1-201ENST00000588399 301 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 SNORA25.18-201ENST00000607153 114 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 MIR6740-201ENST00000618268 113 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 uc_338.16-201ENST00000621804 95 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 AC022140.2-201ENST00000623500 188 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 Z97988.1-201ENST00000637697 135 ntBASIC0.11□□□□□ -2.39
FOXF1Q12946 RNU6-1138P-201ENST00000365359 106 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 Y_RNA.428-201ENST00000384078 102 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 Y_RNA.458-201ENST00000384240 102 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 RNU6-937P-201ENST00000384325 106 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 Y_RNA.496-201ENST00000384444 101 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 Y_RNA.547-201ENST00000384654 119 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 RNY4P36-201ENST00000391116 96 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 SNORA26.5-201ENST00000391215 123 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 MIR938-201ENST00000401216 83 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 RNU6-383P-201ENST00000410864 94 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.1□□□□□ -2.39
FOXF1Q12946 SNRPGP12-201ENST00000449481 213 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 RNU7-152P-201ENST00000458982 64 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 RNU7-25P-201ENST00000516544 62 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 AC007751.1-201ENST00000529260 376 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 AC022523.2-201ENST00000561045 150 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 AL021707.8-201ENST00000609428 183 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 MIR7111-201ENST00000619751 72 ntBASIC0.1□□□□□ -2.39
FOXF1Q12946 AC010332.2-201ENST00000613083 1904 ntBASIC0.09□□□□□ -2.39
FOXF1Q12946 Y_RNA.36-201ENST00000362602 112 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORA36.1-201ENST00000363424 132 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 RNU4-67P-201ENST00000364569 141 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORA2A-201ENST00000383885 135 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 Y_RNA.387-201ENST00000383918 102 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 Y_RNA.463-201ENST00000384271 102 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORD116-29-201ENST00000384516 83 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 MIR193B-201ENST00000384907 83 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORD12C-201ENST00000386307 89 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 RNA5SP299-201ENST00000391203 116 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 RNU6-1190P-201ENST00000410811 104 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.09□□□□□ -2.4
FOXF1Q12946 AC023449.1-201ENST00000454464 154 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 Y_RNA.666-201ENST00000516187 112 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORA25.12-201ENST00000516202 82 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 RNU7-110P-201ENST00000516891 62 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 RNU6-958P-201ENST00000516995 106 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORD116.3-201ENST00000517176 78 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 SNORD92-201ENST00000585078 85 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 AP000942.4-201ENST00000604811 241 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.09□□□□□ -2.4
FOXF1Q12946 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-1115P-201ENST00000362490 106 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU4-80P-201ENST00000363200 141 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-1309P-201ENST00000363305 108 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 Y_RNA.143-201ENST00000363520 106 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 SNORD118-201ENST00000363593 134 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-899P-201ENST00000363947 107 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 Y_RNA.222-201ENST00000364264 102 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-597P-201ENST00000365620 102 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-187P-201ENST00000384139 106 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR563-201ENST00000385080 79 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR125B2-201ENST00000385128 89 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR644A-201ENST00000385262 94 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNA5SP496-201ENST00000391240 109 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 SNORA26-201ENST00000391286 122 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR548O-201ENST00000408583 114 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR548H2-201ENST00000408874 88 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 Y_RNA.617-201ENST00000410920 90 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-938P-201ENST00000411285 103 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 AC236972.2-201ENST00000434979 310 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU7-102P-201ENST00000458948 62 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-1170P-201ENST00000515974 106 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU6-126P-201ENST00000516685 103 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNU7-53P-201ENST00000516705 60 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 RNA5SP94-201ENST00000516917 108 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR4662B-201ENST00000579498 81 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR8055-201ENST00000610739 97 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 U6atac.1-201ENST00000616025 117 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 AC134878.1-201ENST00000619901 243 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR4315-1-201ENST00000636800 73 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 MIR4315-2-201ENST00000640925 73 ntBASIC0.08□□□□□ -2.4
FOXF1Q12946 Y_RNA.39-201ENST00000362620 98 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 Y_RNA.136-201ENST00000363444 102 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 RNA5SP62-201ENST00000363457 110 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 SNORA72.1-201ENST00000363485 129 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 SNORA42.1-201ENST00000363515 137 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 RNU6-1099P-201ENST00000363533 107 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 Y_RNA.252-201ENST00000364556 101 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 Y_RNA.259-201ENST00000364619 101 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 RNY3-201ENST00000365484 102 ntBASIC0.07□□□□□ -2.4
FOXF1Q12946 Y_RNA.383-201ENST00000383855 97 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms