Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RNU6-781P-201ENST00000516377 101 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 SCARNA15-202ENST00000516881 127 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 AC108081.1-201ENST00000604358 221 ntBASIC1.78□□□□□ -2.12
HOXA4Q00056 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.78□□□□□ -2.13
HOXA4Q00056 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HOXA4Q00056 Y_RNA.114-201ENST00000363265 113 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RNU6-153P-201ENST00000364422 104 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 Y_RNA.410-201ENST00000383992 113 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RNU6-203P-201ENST00000384038 104 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 SNORD38C-201ENST00000384381 69 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 MIR516B2-201ENST00000385190 85 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RNU6-360P-201ENST00000390944 104 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 SNORA11.2-201ENST00000408318 127 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.77□□□□□ -2.13
HOXA4Q00056 PGBD4P5-201ENST00000445958 426 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RN7SL429P-201ENST00000479090 223 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RN7SL489P-201ENST00000486185 223 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RN7SL327P-201ENST00000488659 223 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RNA5SP236-201ENST00000516169 116 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.77□□□□□ -2.13
HOXA4Q00056 Y_RNA.757-201ENST00000578934 114 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 MIR5197-201ENST00000583721 112 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 AL359881.1-201ENST00000602916 267 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 RN7SL853P-201ENST00000617250 223 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 SNORD3E-202ENST00000627253 216 ntBASIC1.77□□□□□ -2.13
HOXA4Q00056 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.77□□□□□ -2.13
HOXA4Q00056 AL442644.1-201ENST00000454390 3105 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 RNU6-1189P-201ENST00000383958 107 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 MIR660-201ENST00000385235 97 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 RNY4P18-201ENST00000391107 89 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 RNA5SP425-201ENST00000410336 112 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.76□□□□□ -2.13
HOXA4Q00056 AL158147.1-201ENST00000443970 75 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 AC011753.1-201ENST00000451001 220 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 RNA5SP200-201ENST00000516360 103 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 AP003484.1-201ENST00000530974 250 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 MIR1273D-201ENST00000577266 86 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 AL022345.2-201ENST00000606307 135 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 AL513423.1-201ENST00000621695 132 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 AC095038.3-201ENST00000634439 195 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 MIR3914-2-201ENST00000637339 95 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.76□□□□□ -2.13
HOXA4Q00056 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HOXA4Q00056 RNU6-457P-201ENST00000363999 107 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 SNORA2.2-201ENST00000365473 135 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 Y_RNA.494-201ENST00000384432 111 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 Y_RNA.563-201ENST00000384707 108 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 RNA5SP212-201ENST00000391223 107 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 RNA5SP338-201ENST00000410495 85 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.75□□□□□ -2.13
HOXA4Q00056 RNU6-830P-201ENST00000516353 107 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 RNA5SP82-201ENST00000516707 92 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 Y_RNA.712-201ENST00000517011 92 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 AC002984.1-201ENST00000591692 448 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 AL773524.1-201ENST00000614065 229 ntBASIC1.75□□□□□ -2.13
HOXA4Q00056 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
HOXA4Q00056 MIR424-201ENST00000362227 98 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 SNORA6-201ENST00000384033 151 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 Y_RNA.440-201ENST00000384120 114 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 MIR526A1-201ENST00000384897 85 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 RN7SKP192-201ENST00000411291 327 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 RNU6-919P-201ENST00000516731 104 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 RNU7-181P-201ENST00000517234 74 ntBASIC1.74□□□□□ -2.13
HOXA4Q00056 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.74□□□□□ -2.13
HOXA4Q00056 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXA4Q00056 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HOXA4Q00056 RNU6-439P-201ENST00000384188 106 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 SNORA70B-201ENST00000384210 135 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 U8.17-201ENST00000391292 132 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 AL356320.1-201ENST00000429616 163 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 MTATP6P21-201ENST00000440681 189 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 AC087499.4-201ENST00000448505 178 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 AL021397.1-201ENST00000451806 248 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 SUMO2P16-201ENST00000519475 264 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 IGKV3-31-201ENST00000523109 329 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
HOXA4Q00056 MTND5P34-201ENST00000568888 325 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.73□□□□□ -2.13
HOXA4Q00056 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.73□□□□□ -2.13
HOXA4Q00056 MIR6132-201ENST00000622083 109 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 MIR203B-201ENST00000636080 86 ntBASIC1.73□□□□□ -2.13
HOXA4Q00056 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HOXA4Q00056 MIR194-1-201ENST00000384892 85 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 MIR452-201ENST00000385020 85 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 AC003989.2-201ENST00000440224 169 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 SNORA18.7-201ENST00000516910 131 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 AC090049.2-201ENST00000550377 109 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 MIR3945-201ENST00000581853 98 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 AC106754.2-201ENST00000623006 233 ntBASIC1.72□□□□□ -2.13
HOXA4Q00056 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXA4Q00056 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.71□□□□□ -2.14
HOXA4Q00056 SNORD58C-201ENST00000365223 64 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 Y_RNA.351-201ENST00000365436 96 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 RNU6-1144P-201ENST00000384247 104 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 RNU6-476P-201ENST00000384726 107 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 MIR136-201ENST00000385207 82 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 RNU6-1064P-201ENST00000410626 104 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 Y_RNA.617-201ENST00000410920 90 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 AC004965.1-201ENST00000413033 213 ntBASIC1.71□□□□□ -2.14
HOXA4Q00056 RNU6-717P-201ENST00000459076 104 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms