Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 POLR2KP2-201ENST00000438155 177 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.18□□□□□ -2.38
FOXA1P55317 RNU7-56P-201ENST00000458744 62 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 RNU7-62P-201ENST00000458856 62 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 snoU13.16-201ENST00000459350 104 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 RNU4-77P-201ENST00000516692 156 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 SNORA20.3-201ENST00000516880 132 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 uc_338.6-201ENST00000613544 171 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 AC092634.7-201ENST00000621022 103 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 MIR1302-1-201ENST00000637932 143 ntBASIC0.18□□□□□ -2.38
FOXA1P55317 RNU6-1115P-201ENST00000362490 106 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 Y_RNA.39-201ENST00000362620 98 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 Y_RNA.142-201ENST00000363491 102 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 Y_RNA.813-201ENST00000364639 102 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 Y_RNA.286-201ENST00000364813 102 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 RNY3-201ENST00000365484 102 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 SNORA24-201ENST00000384096 131 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 Y_RNA.494-201ENST00000384432 111 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 MIR548O-201ENST00000408583 114 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 AC138393.2-201ENST00000414742 246 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 AL160004.2-201ENST00000432935 350 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 U8.20-201ENST00000459445 131 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 AC107297.1-201ENST00000459991 176 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 AC091959.1-201ENST00000495857 238 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 Y_RNA.661-201ENST00000516003 99 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 SNORD58B-201ENST00000607313 66 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.17□□□□□ -2.38
FOXA1P55317 AC134878.1-201ENST00000619901 243 ntBASIC0.17□□□□□ -2.38
FOXA1P55317 MIR103A1-201ENST00000362165 78 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 Y_RNA.80-201ENST00000362996 102 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 Y_RNA.187-201ENST00000363918 113 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 Y_RNA.241-201ENST00000364470 117 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 Y_RNA.485-201ENST00000384395 102 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 RNU6-308P-201ENST00000390957 107 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 RNU6-679P-201ENST00000391003 106 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 RNU6-1248P-201ENST00000391096 64 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 Y_RNA.619-201ENST00000410951 90 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 AC236972.2-201ENST00000434979 310 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 RNU7-152P-201ENST00000458982 64 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 RNU7-67P-201ENST00000459003 62 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 SNORA18.4-201ENST00000516440 124 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 SNORA40.14-201ENST00000516543 86 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 AL355297.3-201ENST00000604082 446 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 AL138825.1-201ENST00000618587 192 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 AC022140.2-201ENST00000623500 188 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 AL606534.2-204ENST00000635008 178 ntBASIC0.16□□□□□ -2.38
FOXA1P55317 RNU6-349P-201ENST00000362402 107 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 Y_RNA.68-201ENST00000362881 102 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 RNU6-1327P-201ENST00000365302 105 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 MIR938-201ENST00000401216 83 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 SNORD71-201ENST00000411292 86 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 AC108740.1-201ENST00000498629 225 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 SEPT14P8-201ENST00000508026 178 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 RNU6-1170P-201ENST00000515974 106 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 SNORA25.12-201ENST00000516202 82 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 RNU6-191P-201ENST00000516295 94 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 RNU7-149P-201ENST00000516739 59 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 RNU6-958P-201ENST00000516995 106 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 AP003327.1-201ENST00000529684 127 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.15□□□□□ -2.39
FOXA1P55317 AL132765.2-201ENST00000610812 351 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 MIR6740-201ENST00000618268 113 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 AC010332.2-201ENST00000613083 1904 ntBASIC0.15□□□□□ -2.39
FOXA1P55317 SNORD115-34-201ENST00000362441 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-12-201ENST00000362583 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-29-201ENST00000362834 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-9-201ENST00000362912 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-21-201ENST00000362963 81 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-14-201ENST00000363090 81 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-13-201ENST00000363358 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-41-201ENST00000363608 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-11-201ENST00000363616 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-5-201ENST00000363633 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-39-201ENST00000363694 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-4-201ENST00000363810 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-16-201ENST00000363887 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-6-201ENST00000363942 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 RNU6-899P-201ENST00000363947 107 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-42-201ENST00000364273 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 Y_RNA.252-201ENST00000364556 101 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORA63C-201ENST00000364578 129 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 RNA5SP517-201ENST00000364724 117 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-15-201ENST00000364809 81 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-1-201ENST00000364961 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-26-201ENST00000365067 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-10-201ENST00000365073 81 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 RNU1-115P-201ENST00000365329 160 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-43-201ENST00000365503 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 SNORD115-36-201ENST00000365629 82 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 Y_RNA.471-201ENST00000384312 102 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 MIR518A1-201ENST00000385068 85 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 RNU6-130P-201ENST00000411112 103 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.14□□□□□ -2.39
FOXA1P55317 AC023449.1-201ENST00000454464 154 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 Y_RNA.632-201ENST00000459189 102 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 Y_RNA.666-201ENST00000516187 112 ntBASIC0.14□□□□□ -2.39
FOXA1P55317 Y_RNA.713-201ENST00000517013 96 ntBASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 176.7 ms