Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNU6-830P-201ENST00000516353 107 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 MIR3122-201ENST00000577243 73 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 MIR5089-201ENST00000580047 84 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 TUG1_4.1-201ENST00000619464 181 ntBASIC1.61□□□□□ -2.15
PDLIM4P50479 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.61□□□□□ -2.15
PDLIM4P50479 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.61□□□□□ -2.15
PDLIM4P50479 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.61□□□□□ -2.15
PDLIM4P50479 RNU6-1084P-201ENST00000362498 107 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 RNU1-17P-201ENST00000363022 152 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 Y_RNA.120-201ENST00000363304 110 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 MIR539-201ENST00000365690 78 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 Y_RNA.420-201ENST00000384043 110 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 RNU6-360P-201ENST00000390944 104 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 Y_RNA.584-201ENST00000391090 114 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 RNA5SP127-201ENST00000411051 133 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 STAG3L5P-204ENST00000443759 179 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 Y_RNA.666-201ENST00000516187 112 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 MIR4299-201ENST00000577899 72 ntBASIC1.6□□□□□ -2.15
PDLIM4P50479 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.6□□□□□ -2.15
PDLIM4P50479 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.6□□□□□ -2.15
PDLIM4P50479 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
PDLIM4P50479 SNORA4.2-201ENST00000365313 147 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 Y_RNA.410-201ENST00000383992 113 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 RNU6-1117P-201ENST00000384525 104 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 MIR518F-201ENST00000384973 87 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 MIR891A-201ENST00000401237 79 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 CYCSP49-201ENST00000420810 319 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 AL606753.1-201ENST00000427435 87 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 AL603825.1-201ENST00000438481 80 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 RNA5SP57-201ENST00000459463 123 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 AL513423.1-201ENST00000621695 132 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 AC091895.1-201ENST00000624494 256 ntBASIC1.59□□□□□ -2.15
PDLIM4P50479 RNY1P11-201ENST00000363759 113 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 SNORA1-201ENST00000384107 130 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 RNA5SP212-201ENST00000391223 107 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.58□□□□□ -2.16
PDLIM4P50479 RPL23AP6-201ENST00000446637 472 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 snoU13.27-201ENST00000459278 104 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 AC099513.1-201ENST00000490423 301 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 AC114811.1-201ENST00000507207 168 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 RNU6-693P-201ENST00000516134 107 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 SNORA25.15-201ENST00000516487 89 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 AP001328.1-201ENST00000528550 176 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 U7.2-201ENST00000607576 63 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 AC134878.1-201ENST00000619901 243 ntBASIC1.58□□□□□ -2.16
PDLIM4P50479 RNA5SP276-201ENST00000362580 94 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 SNORD77.3-201ENST00000391113 65 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 U8.16-201ENST00000391279 133 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 AL603914.1-201ENST00000401964 204 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 MIR548O-201ENST00000408583 114 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 AC087499.4-201ENST00000448505 178 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.57□□□□□ -2.16
PDLIM4P50479 RNU6-479P-201ENST00000516348 105 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 RNA5SP168-201ENST00000516642 112 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.57□□□□□ -2.16
PDLIM4P50479 AP000942.3-201ENST00000603702 160 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 AC021506.2-201ENST00000612354 169 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 AC084768.2-201ENST00000622736 221 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.57□□□□□ -2.16
PDLIM4P50479 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
PDLIM4P50479 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
PDLIM4P50479 Y_RNA.280-201ENST00000364765 112 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 RNU6-22P-201ENST00000384355 107 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 Y_RNA.547-201ENST00000384654 119 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 MIR802-201ENST00000390235 94 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 RNU6-460P-201ENST00000391158 108 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 CALM2P4-201ENST00000430810 426 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.56□□□□□ -2.16
PDLIM4P50479 PGBD4P5-201ENST00000445958 426 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 RNA5SP272-201ENST00000516095 111 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 SNORA18.4-201ENST00000516440 124 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 MIR4709-201ENST00000577272 72 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 SNRPGP19-201ENST00000603826 189 ntBASIC1.56□□□□□ -2.16
PDLIM4P50479 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.56□□□□□ -2.16
PDLIM4P50479 MIR424-201ENST00000362227 98 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 SNORD115-28-201ENST00000363931 81 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 Y_RNA.291-201ENST00000364886 113 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNU6-915P-201ENST00000364943 103 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNU6-1336P-201ENST00000383886 109 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 SNORD38C-201ENST00000384381 69 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNU6-163P-201ENST00000384396 106 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 MIR194-1-201ENST00000384892 85 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 AF228730.3-201ENST00000436691 102 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 AC003989.2-201ENST00000440224 169 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNU7-34P-201ENST00000459394 64 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNA5SP236-201ENST00000516169 116 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 SCARNA15-202ENST00000516881 127 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 SNORA31.17-201ENST00000516953 127 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNU6-1270P-201ENST00000517128 108 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 RNU2-60P-201ENST00000517290 128 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.55□□□□□ -2.16
PDLIM4P50479 AC022254.1-201ENST00000567857 235 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 MIR3129-201ENST00000581095 76 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 MIR5197-201ENST00000583721 112 ntBASIC1.55□□□□□ -2.16
PDLIM4P50479 Y_RNA.52-201ENST00000362760 96 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 RNA5SP190-201ENST00000365222 118 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 Y_RNA.338-201ENST00000365320 114 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 RNU6-80P-201ENST00000384195 107 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms