Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORD115-5-201ENST00000363633 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-39-201ENST00000363694 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-4-201ENST00000363810 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-16-201ENST00000363887 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-6-201ENST00000363942 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-42-201ENST00000364273 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-15-201ENST00000364809 81 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-1-201ENST00000364961 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-26-201ENST00000365067 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-10-201ENST00000365073 81 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-43-201ENST00000365503 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-36-201ENST00000365629 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORA27-201ENST00000384323 126 ntBASIC2.52□□□□□ -2.01
LIG3P49916 MIR516B2-201ENST00000385190 85 ntBASIC2.52□□□□□ -2.01
LIG3P49916 MIR136-201ENST00000385207 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 MIR524-201ENST00000385242 87 ntBASIC2.52□□□□□ -2.01
LIG3P49916 MIR1267-201ENST00000408723 78 ntBASIC2.52□□□□□ -2.01
LIG3P49916 Y_RNA.649-201ENST00000459077 103 ntBASIC2.52□□□□□ -2.01
LIG3P49916 AC099513.1-201ENST00000490423 301 ntBASIC2.52□□□□□ -2.01
LIG3P49916 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.52□□□□□ -2.01
LIG3P49916 Y_RNA.709-201ENST00000516952 92 ntBASIC2.52□□□□□ -2.01
LIG3P49916 RNU2-19P-201ENST00000517288 84 ntBASIC2.52□□□□□ -2.01
LIG3P49916 AC090821.2-201ENST00000523552 176 ntBASIC2.52□□□□□ -2.01
LIG3P49916 SNORD115-40-201ENST00000606510 82 ntBASIC2.52□□□□□ -2.01
LIG3P49916 AC091932.4-201ENST00000623386 200 ntBASIC2.52□□□□□ -2.01
LIG3P49916 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.52□□□□□ -2.01
LIG3P49916 AL596211.1-201ENST00000569873 2277 ntBASIC2.51□□□□□ -2.01
LIG3P49916 RNU6-349P-201ENST00000362402 107 ntBASIC2.51□□□□□ -2.01
LIG3P49916 SNORA1.2-201ENST00000365189 134 ntBASIC2.51□□□□□ -2.01
LIG3P49916 SNORD116-21-201ENST00000384507 92 ntBASIC2.51□□□□□ -2.01
LIG3P49916 Y_RNA.528-201ENST00000384575 108 ntBASIC2.51□□□□□ -2.01
LIG3P49916 U8.17-201ENST00000391292 132 ntBASIC2.51□□□□□ -2.01
LIG3P49916 AC093850.1-201ENST00000454121 251 ntBASIC2.51□□□□□ -2.01
LIG3P49916 RNU6-589P-201ENST00000516485 107 ntBASIC2.51□□□□□ -2.01
LIG3P49916 SNORA31.17-201ENST00000516953 127 ntBASIC2.51□□□□□ -2.01
LIG3P49916 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.51□□□□□ -2.01
LIG3P49916 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
LIG3P49916 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
LIG3P49916 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.5□□□□□ -2.01
LIG3P49916 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.5□□□□□ -2.01
LIG3P49916 MIR424-201ENST00000362227 98 ntBASIC2.5□□□□□ -2.01
LIG3P49916 RNY4P18-201ENST00000391107 89 ntBASIC2.5□□□□□ -2.01
LIG3P49916 SNX2P2-201ENST00000424553 323 ntBASIC2.5□□□□□ -2.01
LIG3P49916 AC107297.1-201ENST00000459991 176 ntBASIC2.5□□□□□ -2.01
LIG3P49916 RNU7-181P-201ENST00000517234 74 ntBASIC2.5□□□□□ -2.01
LIG3P49916 AC002984.1-201ENST00000591692 448 ntBASIC2.5□□□□□ -2.01
LIG3P49916 MIR6895-201ENST00000613497 78 ntBASIC2.5□□□□□ -2.01
LIG3P49916 MIR342-201ENST00000362212 99 ntBASIC2.49□□□□□ -2.01
LIG3P49916 RNU6-880P-201ENST00000384526 107 ntBASIC2.49□□□□□ -2.01
LIG3P49916 RNU6-360P-201ENST00000390944 104 ntBASIC2.49□□□□□ -2.01
LIG3P49916 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.49□□□□□ -2.01
LIG3P49916 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC2.49□□□□□ -2.01
LIG3P49916 RNA5SP57-201ENST00000459463 123 ntBASIC2.49□□□□□ -2.01
LIG3P49916 RNU7-96P-201ENST00000459535 64 ntBASIC2.49□□□□□ -2.01
LIG3P49916 RPS29P24-201ENST00000486345 171 ntBASIC2.49□□□□□ -2.01
LIG3P49916 COX6CP6-201ENST00000490840 228 ntBASIC2.49□□□□□ -2.01
LIG3P49916 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.49□□□□□ -2.01
LIG3P49916 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.49□□□□□ -2.01
LIG3P49916 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.48□□□□□ -2.01
LIG3P49916 MIR21-201ENST00000362134 72 ntBASIC2.48□□□□□ -2.01
LIG3P49916 SNORA67.4-201ENST00000384688 142 ntBASIC2.48□□□□□ -2.01
LIG3P49916 SNORD23.1-201ENST00000408212 104 ntBASIC2.48□□□□□ -2.01
LIG3P49916 AL035398.1-201ENST00000430869 322 ntBASIC2.48□□□□□ -2.01
LIG3P49916 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.48□□□□□ -2.01
LIG3P49916 AC055731.1-201ENST00000474387 401 ntBASIC2.48□□□□□ -2.01
LIG3P49916 RNU6-998P-201ENST00000515894 101 ntBASIC2.48□□□□□ -2.01
LIG3P49916 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
LIG3P49916 RNA5SP456-201ENST00000364002 114 ntBASIC2.47□□□□□ -2.01
LIG3P49916 MIR548A1-201ENST00000385041 97 ntBASIC2.47□□□□□ -2.01
LIG3P49916 AL359511.1-201ENST00000402970 211 ntBASIC2.47□□□□□ -2.01
LIG3P49916 AC011753.1-201ENST00000451001 220 ntBASIC2.47□□□□□ -2.01
LIG3P49916 AC079804.2-201ENST00000490376 200 ntBASIC2.47□□□□□ -2.01
LIG3P49916 AC021443.1-201ENST00000604478 211 ntBASIC2.47□□□□□ -2.01
LIG3P49916 AP000553.5-201ENST00000641933 54 ntBASIC2.47□□□□□ -2.01
LIG3P49916 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
LIG3P49916 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.46□□□□□ -2.02
LIG3P49916 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
LIG3P49916 MIR302B-201ENST00000362188 73 ntBASIC2.46□□□□□ -2.02
LIG3P49916 Y_RNA.370-201ENST00000365589 108 ntBASIC2.46□□□□□ -2.02
LIG3P49916 SNORA70.7-201ENST00000384159 133 ntBASIC2.46□□□□□ -2.02
LIG3P49916 MIR570-201ENST00000384917 97 ntBASIC2.46□□□□□ -2.02
LIG3P49916 PDCD5P2-201ENST00000507570 312 ntBASIC2.46□□□□□ -2.02
LIG3P49916 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.46□□□□□ -2.02
LIG3P49916 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
LIG3P49916 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
LIG3P49916 MIRLET7G-201ENST00000362280 84 ntBASIC2.45□□□□□ -2.02
LIG3P49916 RNU6-1123P-201ENST00000362347 106 ntBASIC2.45□□□□□ -2.02
LIG3P49916 Y_RNA.35-201ENST00000362601 101 ntBASIC2.45□□□□□ -2.02
LIG3P49916 SNORA63.4-201ENST00000362763 126 ntBASIC2.45□□□□□ -2.02
LIG3P49916 RNY4P20-201ENST00000516678 93 ntBASIC2.45□□□□□ -2.02
LIG3P49916 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.45□□□□□ -2.02
LIG3P49916 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.45□□□□□ -2.02
LIG3P49916 MIR4435-1-201ENST00000582552 80 ntBASIC2.45□□□□□ -2.02
LIG3P49916 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.45□□□□□ -2.02
LIG3P49916 RNU6-153P-201ENST00000364422 104 ntBASIC2.44□□□□□ -2.02
LIG3P49916 RNA5SP126-201ENST00000365092 109 ntBASIC2.44□□□□□ -2.02
LIG3P49916 SNORA22-201ENST00000383907 134 ntBASIC2.44□□□□□ -2.02
LIG3P49916 Y_RNA.494-201ENST00000384432 111 ntBASIC2.44□□□□□ -2.02
LIG3P49916 MIR526A1-201ENST00000384897 85 ntBASIC2.44□□□□□ -2.02
LIG3P49916 AC063976.4-201ENST00000421971 163 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms