Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 MIR4791-201ENST00000607666 84 ntBASIC0.86□□□□□ -2.27
CDX1P47902 MIR6504-201ENST00000613520 61 ntBASIC0.86□□□□□ -2.27
CDX1P47902 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
CDX1P47902 MIR1287-201ENST00000408492 90 ntBASIC0.85□□□□□ -2.27
CDX1P47902 RPS3AP1-201ENST00000413190 320 ntBASIC0.85□□□□□ -2.27
CDX1P47902 POLR2J4-204ENST00000418424 324 ntBASIC0.85□□□□□ -2.27
CDX1P47902 AL392103.1-201ENST00000447000 198 ntBASIC0.85□□□□□ -2.27
CDX1P47902 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.85□□□□□ -2.27
CDX1P47902 MTCO2P24-201ENST00000515611 426 ntBASIC0.85□□□□□ -2.27
CDX1P47902 ACA64.5-201ENST00000516207 127 ntBASIC0.85□□□□□ -2.27
CDX1P47902 MIR5688-201ENST00000580619 83 ntBASIC0.85□□□□□ -2.27
CDX1P47902 AC243994.1-201ENST00000618627 109 ntBASIC0.85□□□□□ -2.27
CDX1P47902 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.85□□□□□ -2.27
CDX1P47902 U6.104-201ENST00000637979 90 ntBASIC0.85□□□□□ -2.27
CDX1P47902 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.85□□□□□ -2.27
CDX1P47902 Y_RNA.44-201ENST00000362676 108 ntBASIC0.84□□□□□ -2.27
CDX1P47902 Y_RNA.117-201ENST00000363294 101 ntBASIC0.84□□□□□ -2.27
CDX1P47902 Y_RNA.275-201ENST00000364726 110 ntBASIC0.84□□□□□ -2.27
CDX1P47902 RNU1-36P-201ENST00000365130 165 ntBASIC0.84□□□□□ -2.27
CDX1P47902 RNU6-396P-201ENST00000365369 105 ntBASIC0.84□□□□□ -2.27
CDX1P47902 SNORD111-201ENST00000408139 94 ntBASIC0.84□□□□□ -2.27
CDX1P47902 RNU6-994P-201ENST00000410507 111 ntBASIC0.84□□□□□ -2.27
CDX1P47902 AC067940.1-201ENST00000458411 300 ntBASIC0.84□□□□□ -2.27
CDX1P47902 RPL39P28-201ENST00000465655 155 ntBASIC0.84□□□□□ -2.27
CDX1P47902 MTATP8P1-201ENST00000467115 207 ntBASIC0.84□□□□□ -2.27
CDX1P47902 SNORD77.4-201ENST00000516158 81 ntBASIC0.84□□□□□ -2.27
CDX1P47902 MIR2115-201ENST00000516657 100 ntBASIC0.84□□□□□ -2.27
CDX1P47902 MIR6516-201ENST00000630554 81 ntBASIC0.84□□□□□ -2.27
CDX1P47902 MTND1P7-201ENST00000632801 297 ntBASIC0.84□□□□□ -2.27
CDX1P47902 Y_RNA.237-201ENST00000364439 102 ntBASIC0.83□□□□□ -2.28
CDX1P47902 Y_RNA.241-201ENST00000364470 117 ntBASIC0.83□□□□□ -2.28
CDX1P47902 SNORD113.3-201ENST00000364630 78 ntBASIC0.83□□□□□ -2.28
CDX1P47902 Y_RNA.376-201ENST00000365638 108 ntBASIC0.83□□□□□ -2.28
CDX1P47902 Y_RNA.486-201ENST00000384398 107 ntBASIC0.83□□□□□ -2.28
CDX1P47902 Y_RNA.512-201ENST00000384518 102 ntBASIC0.83□□□□□ -2.28
CDX1P47902 MIR1302-7-201ENST00000408841 72 ntBASIC0.83□□□□□ -2.28
CDX1P47902 RNA5SP255-201ENST00000516370 107 ntBASIC0.83□□□□□ -2.28
CDX1P47902 AC036111.3-201ENST00000526389 112 ntBASIC0.83□□□□□ -2.28
CDX1P47902 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
CDX1P47902 AC211469.2-201ENST00000605461 205 ntBASIC0.83□□□□□ -2.28
CDX1P47902 AC106800.4-201ENST00000614905 153 ntBASIC0.83□□□□□ -2.28
CDX1P47902 SNORA63-201ENST00000363450 132 ntBASIC0.82□□□□□ -2.28
CDX1P47902 RNU6-654P-201ENST00000364373 107 ntBASIC0.82□□□□□ -2.28
CDX1P47902 SNORA2B-201ENST00000384583 137 ntBASIC0.82□□□□□ -2.28
CDX1P47902 SNORD89-201ENST00000390981 114 ntBASIC0.82□□□□□ -2.28
CDX1P47902 MIR1302-6-201ENST00000408466 90 ntBASIC0.82□□□□□ -2.28
CDX1P47902 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.82□□□□□ -2.28
CDX1P47902 RNU7-67P-201ENST00000459003 62 ntBASIC0.82□□□□□ -2.28
CDX1P47902 RNU6-693P-201ENST00000516134 107 ntBASIC0.82□□□□□ -2.28
CDX1P47902 Y_RNA.673-201ENST00000516306 88 ntBASIC0.82□□□□□ -2.28
CDX1P47902 RNU6-126P-201ENST00000516685 103 ntBASIC0.82□□□□□ -2.28
CDX1P47902 Y_RNA.720-201ENST00000517166 92 ntBASIC0.82□□□□□ -2.28
CDX1P47902 MIR548AO-201ENST00000579992 96 ntBASIC0.82□□□□□ -2.28
CDX1P47902 RNU6-94P-201ENST00000607728 107 ntBASIC0.82□□□□□ -2.28
CDX1P47902 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
CDX1P47902 SNORD115-28-201ENST00000363931 81 ntBASIC0.81□□□□□ -2.28
CDX1P47902 RNU6-740P-201ENST00000364734 105 ntBASIC0.81□□□□□ -2.28
CDX1P47902 Y_RNA.572-201ENST00000384757 98 ntBASIC0.81□□□□□ -2.28
CDX1P47902 MIR626-201ENST00000385032 94 ntBASIC0.81□□□□□ -2.28
CDX1P47902 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.81□□□□□ -2.28
CDX1P47902 RNU6-365P-201ENST00000517113 106 ntBASIC0.81□□□□□ -2.28
CDX1P47902 AC100767.1-201ENST00000528178 123 ntBASIC0.81□□□□□ -2.28
CDX1P47902 AP001282.2-201ENST00000616149 309 ntBASIC0.81□□□□□ -2.28
CDX1P47902 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.81□□□□□ -2.28
CDX1P47902 Y_RNA.191-201ENST00000363972 113 ntBASIC0.8□□□□□ -2.28
CDX1P47902 Y_RNA.229-201ENST00000364347 113 ntBASIC0.8□□□□□ -2.28
CDX1P47902 RNU6-1160P-201ENST00000384546 104 ntBASIC0.8□□□□□ -2.28
CDX1P47902 MIR608-201ENST00000384820 100 ntBASIC0.8□□□□□ -2.28
CDX1P47902 RNA5SP95-201ENST00000410319 137 ntBASIC0.8□□□□□ -2.28
CDX1P47902 RNU2-64P-201ENST00000411315 191 ntBASIC0.8□□□□□ -2.28
CDX1P47902 AC087499.4-201ENST00000448505 178 ntBASIC0.8□□□□□ -2.28
CDX1P47902 U7.7-201ENST00000459276 60 ntBASIC0.8□□□□□ -2.28
CDX1P47902 RNU2-13P-201ENST00000515909 113 ntBASIC0.8□□□□□ -2.28
CDX1P47902 Y_RNA.679-201ENST00000516416 91 ntBASIC0.8□□□□□ -2.28
CDX1P47902 RNU6-197P-201ENST00000516680 100 ntBASIC0.8□□□□□ -2.28
CDX1P47902 AL442663.2-201ENST00000554385 511 ntBASIC0.8□□□□□ -2.28
CDX1P47902 SNORD114-21-201ENST00000606412 72 ntBASIC0.8□□□□□ -2.28
CDX1P47902 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.8□□□□□ -2.28
CDX1P47902 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-34-201ENST00000362441 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-12-201ENST00000362583 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-29-201ENST00000362834 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-9-201ENST00000362912 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-21-201ENST00000362963 81 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-14-201ENST00000363090 81 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-13-201ENST00000363358 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-41-201ENST00000363608 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-11-201ENST00000363616 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-5-201ENST00000363633 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-39-201ENST00000363694 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-4-201ENST00000363810 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-16-201ENST00000363887 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-6-201ENST00000363942 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-42-201ENST00000364273 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 Y_RNA.224-201ENST00000364308 111 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-15-201ENST00000364809 81 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-1-201ENST00000364961 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-26-201ENST00000365067 82 ntBASIC0.79□□□□□ -2.28
CDX1P47902 SNORD115-10-201ENST00000365073 81 ntBASIC0.79□□□□□ -2.28
CDX1P47902 Y_RNA.326-201ENST00000365176 113 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 199.5 ms