Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.242-201ENST00000364473 110 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 SNORD38C-201ENST00000384381 69 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 SNORA8.3-201ENST00000384679 139 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 MIR15B-201ENST00000385045 98 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 SNORD72-201ENST00000390994 80 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 AL603910.2-201ENST00000407268 136 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 MIR1285-1-201ENST00000408593 84 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 AC063976.4-201ENST00000421971 163 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.98□□□□□ -2.25
TNFRSF4P43489 AC012433.1-201ENST00000588916 398 ntBASIC0.98□□□□□ -2.25
TNFRSF4P43489 Y_RNA.24-201ENST00000362508 103 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 Y_RNA.352-201ENST00000365439 102 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 SNORA80D-201ENST00000384488 135 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 Y_RNA.540-201ENST00000384638 111 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 MIR19B1-201ENST00000384829 87 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 MIR568-201ENST00000385036 95 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 MIR526A2-201ENST00000390198 65 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 RNA5SP496-201ENST00000391240 109 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 MTND3P2-201ENST00000438452 342 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 SNORD79.1-201ENST00000516069 84 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 RNU7-149P-201ENST00000516739 59 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.97□□□□□ -2.25
TNFRSF4P43489 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.97□□□□□ -2.25
TNFRSF4P43489 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
TNFRSF4P43489 uc_338.4-201ENST00000616635 176 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 AC012676.2-201ENST00000619258 186 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 AC015726.2-201ENST00000620112 122 ntBASIC0.97□□□□□ -2.25
TNFRSF4P43489 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
TNFRSF4P43489 Y_RNA.82-201ENST00000363000 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.92-201ENST00000363043 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.235-201ENST00000364412 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.277-201ENST00000364754 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.306-201ENST00000365015 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.312-201ENST00000365089 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.322-201ENST00000365151 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.556-201ENST00000384677 113 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 MIR548H3-201ENST00000408771 118 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.650-201ENST00000459002 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.777-201ENST00000516982 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.771-201ENST00000598668 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 Y_RNA.789-201ENST00000622480 102 ntBASIC0.96□□□□□ -2.26
TNFRSF4P43489 SNORD27-201ENST00000363981 72 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 RNU6-268P-201ENST00000364174 107 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 RNU6-196P-201ENST00000384315 107 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 Y_RNA.477-201ENST00000384352 108 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 Y_RNA.518-201ENST00000384552 113 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 Y_RNA.572-201ENST00000384757 98 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 MIR598-201ENST00000384868 97 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 MIR520C-201ENST00000385005 87 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 Y_RNA.587-201ENST00000391210 103 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 SNORD127-201ENST00000458892 86 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 RNU6-1132P-201ENST00000459214 107 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 SNORD123-201ENST00000459473 70 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.95□□□□□ -2.26
TNFRSF4P43489 SNORA74.3-201ENST00000517108 154 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 AC100767.1-201ENST00000528178 123 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 MIR3973-201ENST00000579824 107 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 HSPE1P19-201ENST00000603327 295 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 AL021707.8-201ENST00000609428 183 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 AL391516.1-201ENST00000554380 2449 ntBASIC0.95□□□□□ -2.26
TNFRSF4P43489 Y_RNA.363-201ENST00000365529 113 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 AC002429.1-201ENST00000437672 148 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.94□□□□□ -2.26
TNFRSF4P43489 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.94□□□□□ -2.26
TNFRSF4P43489 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.94□□□□□ -2.26
TNFRSF4P43489 AC245047.8-201ENST00000456455 284 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 SNORD2.1-201ENST00000458762 69 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 UBL5P1-201ENST00000507979 193 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.94□□□□□ -2.26
TNFRSF4P43489 AL096861.1-201ENST00000610899 123 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 Pinc.1-201ENST00000616452 154 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.94□□□□□ -2.26
TNFRSF4P43489 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.93□□□□□ -2.26
TNFRSF4P43489 Y_RNA.229-201ENST00000364347 113 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 RNU6-342P-201ENST00000384521 104 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 MIR626-201ENST00000385032 94 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 RN7SKP164-201ENST00000516138 266 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 CYP3A137P-201ENST00000562436 69 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 MIR4643-201ENST00000577473 78 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 MIR5000-201ENST00000577717 103 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 MIR5688-201ENST00000580619 83 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 MIR4764-201ENST00000580680 88 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 MIR4661-201ENST00000582720 75 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 U4.1-201ENST00000620349 87 ntBASIC0.93□□□□□ -2.26
TNFRSF4P43489 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
TNFRSF4P43489 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
TNFRSF4P43489 RNU6-702P-201ENST00000364982 107 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 SNORD114-24-201ENST00000365029 72 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 Y_RNA.350-201ENST00000365409 98 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 Y_RNA.416-201ENST00000384014 113 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 RNU6-574P-201ENST00000384265 107 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 SNRPGP14-201ENST00000435400 219 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.92□□□□□ -2.26
TNFRSF4P43489 SNORD77.4-201ENST00000516158 81 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 Y_RNA.668-201ENST00000516233 93 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 RNU7-43P-201ENST00000516554 64 ntBASIC0.92□□□□□ -2.26
TNFRSF4P43489 RNA5SP480-201ENST00000516840 109 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms