Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 RNU6-197P-201ENST00000516680 100 ntBASIC1.72□□□□□ -2.13
CIITAP33076 MIR4422-201ENST00000581938 83 ntBASIC1.72□□□□□ -2.13
CIITAP33076 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.72□□□□□ -2.13
CIITAP33076 AC087685.1-201ENST00000587507 141 ntBASIC1.72□□□□□ -2.13
CIITAP33076 AL442644.1-201ENST00000454390 3105 ntBASIC1.72□□□□□ -2.13
CIITAP33076 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
CIITAP33076 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.71□□□□□ -2.14
CIITAP33076 MIR424-201ENST00000362227 98 ntBASIC1.71□□□□□ -2.14
CIITAP33076 SNORD33-201ENST00000362761 85 ntBASIC1.71□□□□□ -2.14
CIITAP33076 RNU1-42P-201ENST00000364033 160 ntBASIC1.71□□□□□ -2.14
CIITAP33076 Y_RNA.398-201ENST00000383952 99 ntBASIC1.71□□□□□ -2.14
CIITAP33076 MIR548A2-201ENST00000384956 97 ntBASIC1.71□□□□□ -2.14
CIITAP33076 RNU6-239P-201ENST00000390990 99 ntBASIC1.71□□□□□ -2.14
CIITAP33076 JTBP1-201ENST00000441314 247 ntBASIC1.71□□□□□ -2.14
CIITAP33076 RNA5SP153-201ENST00000516498 76 ntBASIC1.71□□□□□ -2.14
CIITAP33076 AC120024.3-201ENST00000603167 156 ntBASIC1.71□□□□□ -2.14
CIITAP33076 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.71□□□□□ -2.14
CIITAP33076 RNU6-268P-201ENST00000364174 107 ntBASIC1.7□□□□□ -2.14
CIITAP33076 RNU6-978P-201ENST00000364371 103 ntBASIC1.7□□□□□ -2.14
CIITAP33076 Y_RNA.506-201ENST00000384494 102 ntBASIC1.7□□□□□ -2.14
CIITAP33076 MIR499A-201ENST00000384903 122 ntBASIC1.7□□□□□ -2.14
CIITAP33076 SNORA67.6-201ENST00000391093 99 ntBASIC1.7□□□□□ -2.14
CIITAP33076 RNU4-62P-201ENST00000410125 130 ntBASIC1.7□□□□□ -2.14
CIITAP33076 AC023449.1-201ENST00000454464 154 ntBASIC1.7□□□□□ -2.14
CIITAP33076 RNU7-34P-201ENST00000459394 64 ntBASIC1.7□□□□□ -2.14
CIITAP33076 MIR4285-201ENST00000581001 85 ntBASIC1.7□□□□□ -2.14
CIITAP33076 AC006441.5-201ENST00000612680 209 ntBASIC1.7□□□□□ -2.14
CIITAP33076 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.7□□□□□ -2.14
CIITAP33076 AL513423.1-201ENST00000621695 132 ntBASIC1.7□□□□□ -2.14
CIITAP33076 AC027279.3-201ENST00000625055 122 ntBASIC1.7□□□□□ -2.14
CIITAP33076 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CIITAP33076 RNU6-1084P-201ENST00000362498 107 ntBASIC1.69□□□□□ -2.14
CIITAP33076 RNU6-833P-201ENST00000363486 107 ntBASIC1.69□□□□□ -2.14
CIITAP33076 SNORA25.9-201ENST00000365087 128 ntBASIC1.69□□□□□ -2.14
CIITAP33076 AC006461.1-201ENST00000412637 326 ntBASIC1.69□□□□□ -2.14
CIITAP33076 SUMO1P3-201ENST00000439961 304 ntBASIC1.69□□□□□ -2.14
CIITAP33076 AC093850.1-201ENST00000454121 251 ntBASIC1.69□□□□□ -2.14
CIITAP33076 CYCTP-201ENST00000504253 315 ntBASIC1.69□□□□□ -2.14
CIITAP33076 Y_RNA.666-201ENST00000516187 112 ntBASIC1.69□□□□□ -2.14
CIITAP33076 RNU6-970P-201ENST00000516312 107 ntBASIC1.69□□□□□ -2.14
CIITAP33076 Y_RNA.714-201ENST00000517065 90 ntBASIC1.69□□□□□ -2.14
CIITAP33076 AC007751.1-201ENST00000529260 376 ntBASIC1.69□□□□□ -2.14
CIITAP33076 SNORA77B-201ENST00000578179 125 ntBASIC1.69□□□□□ -2.14
CIITAP33076 MIR4662B-201ENST00000579498 81 ntBASIC1.69□□□□□ -2.14
CIITAP33076 AL365434.2-201ENST00000607979 234 ntBASIC1.69□□□□□ -2.14
CIITAP33076 MIR3658-201ENST00000636291 56 ntBASIC1.69□□□□□ -2.14
CIITAP33076 Y_RNA.8-201ENST00000362353 102 ntBASIC1.68□□□□□ -2.14
CIITAP33076 snoU2-30.1-201ENST00000365012 70 ntBASIC1.68□□□□□ -2.14
CIITAP33076 SNORD61-201ENST00000384252 73 ntBASIC1.68□□□□□ -2.14
CIITAP33076 RNU6-163P-201ENST00000384396 106 ntBASIC1.68□□□□□ -2.14
CIITAP33076 RNU6-768P-201ENST00000384683 107 ntBASIC1.68□□□□□ -2.14
CIITAP33076 MIR660-201ENST00000385235 97 ntBASIC1.68□□□□□ -2.14
CIITAP33076 MIR518E-201ENST00000385252 88 ntBASIC1.68□□□□□ -2.14
CIITAP33076 PGBD4P5-201ENST00000445958 426 ntBASIC1.68□□□□□ -2.14
CIITAP33076 RNU1-98P-201ENST00000458992 160 ntBASIC1.68□□□□□ -2.14
CIITAP33076 SNORA31.24-201ENST00000517232 57 ntBASIC1.68□□□□□ -2.14
CIITAP33076 MIR378D2-201ENST00000580636 98 ntBASIC1.68□□□□□ -2.14
CIITAP33076 RNY1P11-201ENST00000363759 113 ntBASIC1.67□□□□□ -2.14
CIITAP33076 Y_RNA.336-201ENST00000365307 109 ntBASIC1.67□□□□□ -2.14
CIITAP33076 Y_RNA.357-201ENST00000365487 109 ntBASIC1.67□□□□□ -2.14
CIITAP33076 Y_RNA.466-201ENST00000384294 113 ntBASIC1.67□□□□□ -2.14
CIITAP33076 RNU6-997P-201ENST00000384725 107 ntBASIC1.67□□□□□ -2.14
CIITAP33076 MIR320A-201ENST00000385302 82 ntBASIC1.67□□□□□ -2.14
CIITAP33076 MIR1304-201ENST00000408243 91 ntBASIC1.67□□□□□ -2.14
CIITAP33076 RNU2-70P-201ENST00000410718 179 ntBASIC1.67□□□□□ -2.14
CIITAP33076 RPL30P13-201ENST00000418873 348 ntBASIC1.67□□□□□ -2.14
CIITAP33076 AC245517.4-201ENST00000448601 281 ntBASIC1.67□□□□□ -2.14
CIITAP33076 AC107027.2-201ENST00000512197 115 ntBASIC1.67□□□□□ -2.14
CIITAP33076 RNU7-12P-201ENST00000516030 62 ntBASIC1.67□□□□□ -2.14
CIITAP33076 RNU7-200P-201ENST00000516105 62 ntBASIC1.67□□□□□ -2.14
CIITAP33076 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.67□□□□□ -2.14
CIITAP33076 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CIITAP33076 RNU6-888P-201ENST00000363010 101 ntBASIC1.66□□□□□ -2.14
CIITAP33076 SNORD14E-201ENST00000364009 85 ntBASIC1.66□□□□□ -2.14
CIITAP33076 RNU6-1336P-201ENST00000383886 109 ntBASIC1.66□□□□□ -2.14
CIITAP33076 RNU6-442P-201ENST00000383968 104 ntBASIC1.66□□□□□ -2.14
CIITAP33076 RNU6-125P-201ENST00000384505 107 ntBASIC1.66□□□□□ -2.14
CIITAP33076 AC004965.1-201ENST00000413033 213 ntBASIC1.66□□□□□ -2.14
CIITAP33076 RNU6-365P-201ENST00000517113 106 ntBASIC1.66□□□□□ -2.14
CIITAP33076 MIR4778-201ENST00000577635 80 ntBASIC1.66□□□□□ -2.14
CIITAP33076 RNU6-774P-201ENST00000363238 107 ntBASIC1.65□□□□□ -2.15
CIITAP33076 RNU6-597P-201ENST00000365620 102 ntBASIC1.65□□□□□ -2.15
CIITAP33076 SNORD24-201ENST00000383884 75 ntBASIC1.65□□□□□ -2.15
CIITAP33076 SNORD116-18-201ENST00000383961 92 ntBASIC1.65□□□□□ -2.15
CIITAP33076 SNORA1-201ENST00000384107 130 ntBASIC1.65□□□□□ -2.15
CIITAP33076 MIR526A1-201ENST00000384897 85 ntBASIC1.65□□□□□ -2.15
CIITAP33076 MIR518F-201ENST00000384973 87 ntBASIC1.65□□□□□ -2.15
CIITAP33076 RNU1-78P-201ENST00000391248 165 ntBASIC1.65□□□□□ -2.15
CIITAP33076 MIR891A-201ENST00000401237 79 ntBASIC1.65□□□□□ -2.15
CIITAP33076 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.65□□□□□ -2.15
CIITAP33076 AL354695.1-201ENST00000427935 228 ntBASIC1.65□□□□□ -2.15
CIITAP33076 RNU6-346P-201ENST00000516288 111 ntBASIC1.65□□□□□ -2.15
CIITAP33076 AP000648.3-201ENST00000623539 4507 ntBASIC1.65□□□□□ -2.15
CIITAP33076 U8.1-201ENST00000362843 134 ntBASIC1.64□□□□□ -2.15
CIITAP33076 RNU6-1082P-201ENST00000364574 107 ntBASIC1.64□□□□□ -2.15
CIITAP33076 Y_RNA.337-201ENST00000365312 102 ntBASIC1.64□□□□□ -2.15
CIITAP33076 Y_RNA.355-201ENST00000365462 98 ntBASIC1.64□□□□□ -2.15
CIITAP33076 RNU6-321P-201ENST00000410912 106 ntBASIC1.64□□□□□ -2.15
CIITAP33076 AP1B1P2-201ENST00000416196 106 ntBASIC1.64□□□□□ -2.15
CIITAP33076 BTF3P4-201ENST00000418852 495 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 108.8 ms