| ARNT | P27540 | RNU6-94P-201 | ENST00000607728 | 107 nt | BASIC | 2.57 | □□□□□ -2 | | |
| ARNT | P27540 | WARS-244 | ENST00000627608 | 123 nt | TSL 5 BASIC | 2.57 | □□□□□ -2 | | |
| ARNT | P27540 | MAP3K2-203 | ENST00000409947 | 10992 nt | APPRIS P1 TSL 1 (best) BASIC | 2.57 | □□□□□ -2 | | |
| ARNT | P27540 | MACC1-202 | ENST00000400331 | 9159 nt | APPRIS P1 TSL 2 BASIC | 2.57 | □□□□□ -2 | | |
| ARNT | P27540 | HIF1A-201 | ENST00000323441 | 3555 nt | TSL 1 (best) BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | CYLC2-201 | ENST00000374798 | 2171 nt | APPRIS P1 TSL 1 (best) BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | Y_RNA.323-201 | ENST00000365157 | 109 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | RNU1-51P-201 | ENST00000365345 | 176 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | Y_RNA.500-201 | ENST00000384466 | 111 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | MIR136-201 | ENST00000385207 | 82 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | SNORD109B-201 | ENST00000458961 | 67 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | SNORD109A-201 | ENST00000459128 | 67 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | UBL5P3-201 | ENST00000475112 | 231 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | GTF3AP2-201 | ENST00000557014 | 266 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | AC021506.2-201 | ENST00000612354 | 169 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | U1.36-201 | ENST00000620684 | 176 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | FO624990.1-201 | ENST00000636373 | 85 nt | BASIC | 2.56 | □□□□□ -2 | | |
| ARNT | P27540 | RNU6-766P-201 | ENST00000362478 | 107 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | SNORA80A-201 | ENST00000363922 | 136 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | SNORA51.5-201 | ENST00000384126 | 131 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | Y_RNA.510-201 | ENST00000384511 | 114 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | AC234781.5-202 | ENST00000453508 | 426 nt | TSL 3 BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | RNU2-11P-201 | ENST00000459191 | 187 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | snoU13.27-201 | ENST00000459278 | 104 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | RNA5SP281-201 | ENST00000516504 | 135 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | MIR3163-201 | ENST00000581592 | 73 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | SNORD14A-201 | ENST00000606526 | 91 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | MIR7106-201 | ENST00000612419 | 65 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | AL513423.1-201 | ENST00000621695 | 132 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | MIR6852-201 | ENST00000621699 | 66 nt | BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | ATP11C-202 | ENST00000361648 | 6010 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.55 | □□□□□ -2 | | |
| ARNT | P27540 | RNU6-859P-201 | ENST00000362728 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | Y_RNA.328-201 | ENST00000365208 | 113 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | Y_RNA.370-201 | ENST00000365589 | 108 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | RNU6-1113P-201 | ENST00000384348 | 107 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | MIR548D2-201 | ENST00000384955 | 97 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | SNORA31.15-201 | ENST00000516771 | 132 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | AC068339.1-201 | ENST00000526965 | 141 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | MIR5092-201 | ENST00000583139 | 88 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | AC021613.1-201 | ENST00000623880 | 111 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | AC010297.1-201 | ENST00000623948 | 149 nt | BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | AC068631.1-220 | ENST00000630726 | 256 nt | TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | LCORL-202 | ENST00000382224 | 4984 nt | APPRIS ALT2 TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | GABRA2-209 | ENST00000510861 | 3411 nt | APPRIS P1 TSL 5 BASIC | 2.54 | □□□□□ -2 | | |
| ARNT | P27540 | U8.6-201 | ENST00000364939 | 135 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | Y_RNA.344-201 | ENST00000365381 | 112 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | RNA5SP144-201 | ENST00000410846 | 116 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | AL022718.1-201 | ENST00000412004 | 84 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | AC108938.1-201 | ENST00000451204 | 136 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | LINC02514-201 | ENST00000509058 | 498 nt | TSL 3 BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | SNORA31.4-201 | ENST00000516049 | 129 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | RNU7-6P-201 | ENST00000516845 | 62 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | MIR5009-201 | ENST00000578736 | 100 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | SNORD3E-202 | ENST00000627253 | 216 nt | BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | PIK3CA-201 | ENST00000263967 | 9093 nt | APPRIS P1 TSL 2 BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | SENP7-205 | ENST00000394091 | 4434 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.53 | □□□□□ -2 | | |
| ARNT | P27540 | Z82195.2-201 | ENST00000612348 | 18351 nt | BASIC | 2.53 | □□□□□ -2.01 | | |
| ARNT | P27540 | AC062016.1-201 | ENST00000355719 | 319 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | MIR660-201 | ENST00000385235 | 97 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | PGBD4P5-201 | ENST00000445958 | 426 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNU7-67P-201 | ENST00000459003 | 62 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | MIR4446-201 | ENST00000578505 | 67 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | RPL12P50-201 | ENST00000603116 | 116 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | AC006254.2-201 | ENST00000603259 | 279 nt | BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | PLD1-217 | ENST00000627725 | 174 nt | TSL 5 BASIC | 2.52 | □□□□□ -2.01 | | |
| ARNT | P27540 | SNORA70.7-201 | ENST00000384159 | 133 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNY4P30-201 | ENST00000410216 | 95 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | RN7SKP192-201 | ENST00000411291 | 327 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | UBE2DNL-203 | ENST00000474922 | 222 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNU6-958P-201 | ENST00000516995 | 106 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | MIR4319-201 | ENST00000577285 | 85 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | MIR5582-201 | ENST00000579697 | 68 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | HOTAIRM1_4.1-201 | ENST00000617934 | 102 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | DNAH14-210 | ENST00000439375 | 13548 nt | APPRIS P1 TSL 5 BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | AC092881.1-201 | ENST00000638218 | 2733 nt | BASIC | 2.51 | □□□□□ -2.01 | | |
| ARNT | P27540 | AP000648.3-201 | ENST00000623539 | 4507 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | ZNF470-202 | ENST00000391709 | 6601 nt | APPRIS P1 TSL 5 BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | SNORA5B-201 | ENST00000363786 | 132 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNA5SP456-201 | ENST00000364002 | 114 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | DEFA7P-201 | ENST00000382676 | 285 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | AL512326.2-201 | ENST00000426359 | 151 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | AC099513.1-201 | ENST00000490423 | 301 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNA5SP356-201 | ENST00000515972 | 94 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNA5SP320-201 | ENST00000516263 | 124 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | AC004812.1-201 | ENST00000540773 | 146 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | MIR3152-201 | ENST00000579801 | 74 nt | BASIC | 2.5 | □□□□□ -2.01 | | |
| ARNT | P27540 | NEB-203 | ENST00000397345 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | NEB-209 | ENST00000427231 | 26202 nt | APPRIS ALT2 TSL 5 BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | Y_RNA.531-201 | ENST00000384589 | 121 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | RPS12P2-201 | ENST00000439728 | 269 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNU7-45P-201 | ENST00000459460 | 63 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | AC010210.1-203 | ENST00000513905 | 260 nt | TSL 3 BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | RNU7-53P-201 | ENST00000516705 | 60 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | IGHVII-40-1-201 | ENST00000517316 | 58 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | HMSD-204 | ENST00000526932 | 162 nt | TSL 3 BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | MIR548AR-201 | ENST00000582191 | 57 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | AP001318.4-201 | ENST00000616637 | 121 nt | BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | FAR1-204 | ENST00000532502 | 5820 nt | TSL 2 BASIC | 2.49 | □□□□□ -2.01 | | |
| ARNT | P27540 | DYNC2H1-202 | ENST00000375735 | 13678 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.48 | □□□□□ -2.01 | | |
| ARNT | P27540 | LINC01790-201 | ENST00000447194 | 2852 nt | TSL 2 BASIC | 2.48 | □□□□□ -2.01 | | |