Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RPS3AP52-201ENST00000435639 297 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 RNU7-165P-201ENST00000458864 60 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 AC091951.2-201ENST00000500762 203 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 RNU6-504P-201ENST00000516568 104 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 PISRT1.1-201ENST00000616930 107 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 AC087588.2-201ENST00000617667 426 ntBASIC-0.48□□□□□ -2.49
LIMS3P0CW19 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 SNORA18.1-201ENST00000363418 128 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 Y_RNA.402-201ENST00000383972 102 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 Y_RNA.450-201ENST00000384198 113 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 SNORA36B-201ENST00000410438 131 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 MTND3P10-201ENST00000450967 341 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 RNU6-320P-201ENST00000516511 106 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 SNORA31.14-201ENST00000516728 116 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC-0.49□□□□□ -2.49
LIMS3P0CW19 MIR4639-201ENST00000584938 69 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 AC067863.3-201ENST00000624172 122 ntBASIC-0.49□□□□□ -2.49
LIMS3P0CW19 Y_RNA.404-201ENST00000383978 102 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 SNORD28-201ENST00000384706 75 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 Y_RNA.577-201ENST00000384794 101 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 MIR215-201ENST00000384858 110 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 SNORD12C-201ENST00000386307 89 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 MIR548K-201ENST00000408406 116 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-0.5□□□□□ -2.49
LIMS3P0CW19 RPL39P25-201ENST00000449384 154 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 AL138752.1-201ENST00000452964 351 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 TRBVB-201ENST00000477100 408 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 MIR4659A-201ENST00000580269 81 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 AC015540.1-201ENST00000615828 501 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 MIR2909-201ENST00000617113 69 ntBASIC-0.5□□□□□ -2.49
LIMS3P0CW19 Y_RNA.85-201ENST00000363014 111 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 Y_RNA.482-201ENST00000384377 111 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 RNU2-16P-201ENST00000410712 136 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AC023449.1-201ENST00000454464 154 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC-0.51□□□□□ -2.49
LIMS3P0CW19 RNU6-314P-201ENST00000516574 104 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AC131281.1-201ENST00000522984 164 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AC138869.1-201ENST00000568623 124 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 MIR3152-201ENST00000579801 74 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 AC011476.5-201ENST00000615594 130 ntBASIC-0.51□□□□□ -2.49
LIMS3P0CW19 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 Y_RNA.118-201ENST00000363300 101 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 SNORD115-28-201ENST00000363931 81 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 SNORA27-201ENST00000384323 126 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 Y_RNA.570-201ENST00000384750 101 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 MIR548F5-201ENST00000408421 86 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 RPS29P25-201ENST00000481709 171 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 RPS29P24-201ENST00000486345 171 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 RNU6-506P-201ENST00000516553 94 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 RNU6-765P-201ENST00000516916 99 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC-0.52□□□□□ -2.49
LIMS3P0CW19 AC006600.1-201ENST00000572529 153 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 DEFB117-201ENST00000602356 141 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 AC063944.3-201ENST00000609969 533 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 MIR6082-201ENST00000613604 109 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 TUG1_4.1-201ENST00000619464 181 ntBASIC-0.52□□□□□ -2.49
LIMS3P0CW19 Y_RNA.112-201ENST00000363250 102 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 Y_RNA.115-201ENST00000363272 98 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 RNU6-1156P-201ENST00000410365 100 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 AC107399.1-201ENST00000451226 265 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 RNU7-4P-201ENST00000516961 62 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 AC144568.1-201ENST00000520139 137 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 AC092447.9-201ENST00000603395 144 ntBASIC-0.53□□□□□ -2.49
LIMS3P0CW19 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-0.53□□□□□ -2.49
LIMS3P0CW19 SNORD114-31-201ENST00000363219 75 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 RNA5SP275-201ENST00000363936 118 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 SNORD114-12-201ENST00000365400 75 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 MIR106A-201ENST00000384870 81 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 MIR329-2-201ENST00000385029 84 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 RNA5SP163-201ENST00000410304 99 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-0.54□□□□□ -2.5
LIMS3P0CW19 MIR4752-201ENST00000579672 72 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 AC124312.5-201ENST00000604451 268 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 AL109933.3-201ENST00000619095 188 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 AC022140.2-201ENST00000623500 188 ntBASIC-0.54□□□□□ -2.5
LIMS3P0CW19 RNU6-161P-201ENST00000363051 106 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 RNU6-403P-201ENST00000363163 104 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 RNY4P14-201ENST00000363656 96 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 RNU7-141P-201ENST00000459304 62 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 IGLVI-20-201ENST00000519296 130 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 MIR4645-201ENST00000583158 77 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 AC244669.1-204ENST00000621564 178 ntBASIC-0.55□□□□□ -2.5
LIMS3P0CW19 Y_RNA.9-201ENST00000362354 101 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 SNORD114-28-201ENST00000363610 72 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 RNU6-46P-201ENST00000383860 107 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 MIR181A1-201ENST00000385026 110 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 RNU6-510P-201ENST00000391239 108 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 MIR548I3-201ENST00000408378 149 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 AC096531.1-201ENST00000419107 107 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 AC005357.1-201ENST00000588399 301 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 RNU1-29P-201ENST00000606574 126 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 TPTEP1-208ENST00000636884 213 ntBASIC-0.56□□□□□ -2.5
LIMS3P0CW19 Y_RNA.89-201ENST00000363031 102 ntBASIC-0.57□□□□□ -2.5
LIMS3P0CW19 RNU6-923P-201ENST00000364753 107 ntBASIC-0.57□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 318.7 ms