Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 RNU6-144P-201ENST00000383951 107 ntBASIC0.82□□□□□ -2.28
SIX3O95343 SNORD111-201ENST00000408139 94 ntBASIC0.82□□□□□ -2.28
SIX3O95343 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.82□□□□□ -2.28
SIX3O95343 MIR1252-201ENST00000408861 65 ntBASIC0.82□□□□□ -2.28
SIX3O95343 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.82□□□□□ -2.28
SIX3O95343 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.82□□□□□ -2.28
SIX3O95343 Y_RNA.639-201ENST00000458981 102 ntBASIC0.82□□□□□ -2.28
SIX3O95343 Y_RNA.631-201ENST00000459607 101 ntBASIC0.82□□□□□ -2.28
SIX3O95343 AC107297.1-201ENST00000459991 176 ntBASIC0.82□□□□□ -2.28
SIX3O95343 RN7SKP164-201ENST00000516138 266 ntBASIC0.82□□□□□ -2.28
SIX3O95343 RNY3P15-201ENST00000516297 97 ntBASIC0.82□□□□□ -2.28
SIX3O95343 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.82□□□□□ -2.28
SIX3O95343 MIR3973-201ENST00000579824 107 ntBASIC0.82□□□□□ -2.28
SIX3O95343 AC025627.3-201ENST00000582078 182 ntBASIC0.82□□□□□ -2.28
SIX3O95343 RAC1P9-201ENST00000604990 392 ntBASIC0.82□□□□□ -2.28
SIX3O95343 RNU6-94P-201ENST00000607728 107 ntBASIC0.82□□□□□ -2.28
SIX3O95343 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.82□□□□□ -2.28
SIX3O95343 AL160413.1-201ENST00000622780 310 ntBASIC0.82□□□□□ -2.28
SIX3O95343 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SIX3O95343 Y_RNA.28-201ENST00000362554 111 ntBASIC0.81□□□□□ -2.28
SIX3O95343 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
SIX3O95343 Y_RNA.418-201ENST00000384029 102 ntBASIC0.81□□□□□ -2.28
SIX3O95343 RNU6-102P-201ENST00000384485 104 ntBASIC0.81□□□□□ -2.28
SIX3O95343 RNU6-763P-201ENST00000390865 106 ntBASIC0.81□□□□□ -2.28
SIX3O95343 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.81□□□□□ -2.28
SIX3O95343 RNU6-764P-201ENST00000516396 105 ntBASIC0.81□□□□□ -2.28
SIX3O95343 MIR2115-201ENST00000516657 100 ntBASIC0.81□□□□□ -2.28
SIX3O95343 Y_RNA.222-201ENST00000364264 102 ntBASIC0.8□□□□□ -2.28
SIX3O95343 SNORD113.3-201ENST00000364630 78 ntBASIC0.8□□□□□ -2.28
SIX3O95343 RNU6-396P-201ENST00000365369 105 ntBASIC0.8□□□□□ -2.28
SIX3O95343 SNORD115-46-201ENST00000390982 71 ntBASIC0.8□□□□□ -2.28
SIX3O95343 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.8□□□□□ -2.28
SIX3O95343 U7.7-201ENST00000459276 60 ntBASIC0.8□□□□□ -2.28
SIX3O95343 RNU6-351P-201ENST00000516097 100 ntBASIC0.8□□□□□ -2.28
SIX3O95343 RNU6-496P-201ENST00000516145 99 ntBASIC0.8□□□□□ -2.28
SIX3O95343 RNU6-830P-201ENST00000516353 107 ntBASIC0.8□□□□□ -2.28
SIX3O95343 MIR4636-201ENST00000582271 80 ntBASIC0.8□□□□□ -2.28
SIX3O95343 MIR4723-201ENST00000585070 81 ntBASIC0.8□□□□□ -2.28
SIX3O95343 C8orf59P2-201ENST00000603441 271 ntBASIC0.8□□□□□ -2.28
SIX3O95343 AC106800.4-201ENST00000614905 153 ntBASIC0.8□□□□□ -2.28
SIX3O95343 AC023934.1-201ENST00000574529 2389 ntBASIC0.79□□□□□ -2.28
SIX3O95343 Y_RNA.152-201ENST00000363578 100 ntBASIC0.79□□□□□ -2.28
SIX3O95343 RNU6-290P-201ENST00000365212 101 ntBASIC0.79□□□□□ -2.28
SIX3O95343 Y_RNA.645-201ENST00000391229 102 ntBASIC0.79□□□□□ -2.28
SIX3O95343 MTCO1P5-201ENST00000433573 344 ntBASIC0.79□□□□□ -2.28
SIX3O95343 HSPE1P25-201ENST00000455484 251 ntBASIC0.79□□□□□ -2.28
SIX3O95343 SNORD11-201ENST00000459124 84 ntBASIC0.79□□□□□ -2.28
SIX3O95343 RPL39P28-201ENST00000465655 155 ntBASIC0.79□□□□□ -2.28
SIX3O95343 RNU2-31P-201ENST00000516954 155 ntBASIC0.79□□□□□ -2.28
SIX3O95343 AP003716.2-201ENST00000528260 108 ntBASIC0.79□□□□□ -2.28
SIX3O95343 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.79□□□□□ -2.28
SIX3O95343 MIR4724-201ENST00000579485 89 ntBASIC0.79□□□□□ -2.28
SIX3O95343 AC013244.2-201ENST00000603396 103 ntBASIC0.79□□□□□ -2.28
SIX3O95343 AC108706.1-201ENST00000611053 297 ntBASIC0.79□□□□□ -2.28
SIX3O95343 AC104465.1-201ENST00000611365 139 ntBASIC0.79□□□□□ -2.28
SIX3O95343 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.79□□□□□ -2.28
SIX3O95343 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.78□□□□□ -2.28
SIX3O95343 Y_RNA.380-201ENST00000365663 111 ntBASIC0.78□□□□□ -2.28
SIX3O95343 Y_RNA.537-201ENST00000384626 109 ntBASIC0.78□□□□□ -2.28
SIX3O95343 MIR605-201ENST00000385078 83 ntBASIC0.78□□□□□ -2.28
SIX3O95343 RNU6-383P-201ENST00000410864 94 ntBASIC0.78□□□□□ -2.28
SIX3O95343 RNU6-847P-201ENST00000411115 108 ntBASIC0.78□□□□□ -2.28
SIX3O95343 PMCHL1-202ENST00000423102 261 ntBASIC0.78□□□□□ -2.28
SIX3O95343 BTF3P11-201ENST00000426582 477 ntBASIC0.78□□□□□ -2.28
SIX3O95343 AC098869.1-201ENST00000481627 292 ntBASIC0.78□□□□□ -2.28
SIX3O95343 MIR4711-201ENST00000578274 70 ntBASIC0.78□□□□□ -2.28
SIX3O95343 AL049861.1-201ENST00000603130 150 ntBASIC0.78□□□□□ -2.28
SIX3O95343 AC006441.5-201ENST00000612680 209 ntBASIC0.78□□□□□ -2.28
SIX3O95343 MIR6516-201ENST00000630554 81 ntBASIC0.78□□□□□ -2.28
SIX3O95343 Y_RNA.128-201ENST00000363391 112 ntBASIC0.77□□□□□ -2.29
SIX3O95343 RNU6-654P-201ENST00000364373 107 ntBASIC0.77□□□□□ -2.29
SIX3O95343 RNU5E-4P-201ENST00000364931 120 ntBASIC0.77□□□□□ -2.29
SIX3O95343 RNY4P3-201ENST00000365254 95 ntBASIC0.77□□□□□ -2.29
SIX3O95343 RNA5SP95-201ENST00000410319 137 ntBASIC0.77□□□□□ -2.29
SIX3O95343 RNA5SP193-201ENST00000410353 107 ntBASIC0.77□□□□□ -2.29
SIX3O95343 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.77□□□□□ -2.29
SIX3O95343 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.77□□□□□ -2.29
SIX3O95343 AP000753.3-201ENST00000604083 169 ntBASIC0.77□□□□□ -2.29
SIX3O95343 AL353765.1-201ENST00000605514 183 ntBASIC0.77□□□□□ -2.29
SIX3O95343 MIR4791-201ENST00000607666 84 ntBASIC0.77□□□□□ -2.29
SIX3O95343 AC013791.1-201ENST00000616619 62 ntBASIC0.77□□□□□ -2.29
SIX3O95343 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.76□□□□□ -2.29
SIX3O95343 MIR1-1-201ENST00000362147 71 ntBASIC0.76□□□□□ -2.29
SIX3O95343 MIR100-201ENST00000385259 80 ntBASIC0.76□□□□□ -2.29
SIX3O95343 Y_RNA.581-201ENST00000391017 97 ntBASIC0.76□□□□□ -2.29
SIX3O95343 AL603910.2-201ENST00000407268 136 ntBASIC0.76□□□□□ -2.29
SIX3O95343 SNORD99-201ENST00000408612 74 ntBASIC0.76□□□□□ -2.29
SIX3O95343 RPS26P5-201ENST00000418544 335 ntBASIC0.76□□□□□ -2.29
SIX3O95343 AL606490.4-201ENST00000423117 127 ntBASIC0.76□□□□□ -2.29
SIX3O95343 SNRPGP14-201ENST00000435400 219 ntBASIC0.76□□□□□ -2.29
SIX3O95343 RNU6-1110P-201ENST00000516462 101 ntBASIC0.76□□□□□ -2.29
SIX3O95343 RNU7-149P-201ENST00000516739 59 ntBASIC0.76□□□□□ -2.29
SIX3O95343 AC243994.1-201ENST00000618627 109 ntBASIC0.76□□□□□ -2.29
SIX3O95343 Y_RNA.19-201ENST00000362462 99 ntBASIC0.75□□□□□ -2.29
SIX3O95343 RNU6-867P-201ENST00000364956 107 ntBASIC0.75□□□□□ -2.29
SIX3O95343 Y_RNA.394-201ENST00000383942 103 ntBASIC0.75□□□□□ -2.29
SIX3O95343 RNU6-474P-201ENST00000384243 107 ntBASIC0.75□□□□□ -2.29
SIX3O95343 Y_RNA.509-201ENST00000384506 99 ntBASIC0.75□□□□□ -2.29
SIX3O95343 RNU6-30P-201ENST00000384561 107 ntBASIC0.75□□□□□ -2.29
SIX3O95343 MIR146A-201ENST00000385201 99 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms