Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 SNORA25.1-201ENST00000362326 128 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-694P-201ENST00000364071 147 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.276-201ENST00000364732 109 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-740P-201ENST00000364734 105 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU1-133P-201ENST00000364867 167 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-326P-201ENST00000365480 107 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-211P-201ENST00000384047 107 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.486-201ENST00000384398 107 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-1289P-201ENST00000384431 106 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 MIR598-201ENST00000384868 97 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 MIR613-201ENST00000385248 95 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 AC090844.1-201ENST00000422019 156 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 AL731563.1-201ENST00000442202 214 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU7-149P-201ENST00000516739 59 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 MIR548AO-201ENST00000579992 96 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 AC131055.1-201ENST00000584626 316 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-94P-201ENST00000607728 107 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 Pinc.1-201ENST00000616452 154 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 MIR6835-201ENST00000621552 64 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 AC008133.2-201ENST00000624540 351 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 MIR6516-201ENST00000630554 81 ntBASIC0.61□□□□□ -2.31
TRAV40A0A0B4J280 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.24-201ENST00000362508 103 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 SNORA63C-201ENST00000364578 129 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-442P-201ENST00000383968 104 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-639P-201ENST00000384074 107 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.547-201ENST00000384654 119 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 MT-TT-201ENST00000387460 66 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 HMGN2P32-201ENST00000444648 269 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 AL392103.1-201ENST00000447000 198 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 snoU13.21-201ENST00000459368 105 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 SERF1AP1-201ENST00000514575 187 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 MTCO2P24-201ENST00000515611 426 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 SCARNA8-201ENST00000515924 131 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-351P-201ENST00000516097 100 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-635P-201ENST00000516651 102 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-453P-201ENST00000516819 85 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 MIR4643-201ENST00000577473 78 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 AC006441.5-201ENST00000612680 209 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 AC106800.4-201ENST00000614905 153 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 MTND1P7-201ENST00000632801 297 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 MIR4251-201ENST00000635819 61 ntBASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.6□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.152-201ENST00000363578 100 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 snoU2_19.4-201ENST00000364329 80 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 MIR548A2-201ENST00000384956 97 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.587-201ENST00000391210 103 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-938P-201ENST00000411285 103 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 AC015818.7-201ENST00000428754 109 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 AC087499.7-201ENST00000441958 109 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 RNU6-830P-201ENST00000516353 107 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 RNU7-43P-201ENST00000516554 64 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 AC036111.3-201ENST00000526389 112 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 AC109810.1-201ENST00000534066 224 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 uc_338.4-201ENST00000616635 176 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 PVT1_3.1-201ENST00000620853 95 ntBASIC0.59□□□□□ -2.31
TRAV40A0A0B4J280 Y_RNA.275-201ENST00000364726 110 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 Y_RNA.396-201ENST00000383949 103 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-472P-201ENST00000384299 107 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 SNORD38C-201ENST00000384381 69 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 MIR802-201ENST00000390235 94 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-1248P-201ENST00000391096 64 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 SNORA53-201ENST00000391141 249 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 MIR548O-201ENST00000408583 114 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 AL035398.1-201ENST00000430869 322 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-1132P-201ENST00000459214 107 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 RNU7-90P-201ENST00000459216 62 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 TRBVB-201ENST00000477100 408 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 RNA5SP436-201ENST00000516020 115 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 Y_RNA.714-201ENST00000517065 90 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 MIR2681-201ENST00000581814 105 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 MIR4791-201ENST00000607666 84 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 SEPT14P17-201ENST00000617978 177 ntBASIC0.58□□□□□ -2.32
TRAV40A0A0B4J280 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 UBE2WP1-201ENST00000362030 340 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 Y_RNA.91-201ENST00000363042 107 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 SNORD45.3-201ENST00000363836 72 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 Y_RNA.229-201ENST00000364347 113 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-514P-201ENST00000384208 107 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 MIR606-201ENST00000384851 96 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 SNORD12-201ENST00000391002 90 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-1228P-201ENST00000391014 107 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 MIR942-201ENST00000401111 86 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 MIR548F4-201ENST00000408515 105 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 PDCD5P2-201ENST00000507570 312 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 RNU2-13P-201ENST00000515909 113 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-561P-201ENST00000516222 102 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 RNU6-197P-201ENST00000516680 100 ntBASIC0.57□□□□□ -2.32
TRAV40A0A0B4J280 Y_RNA.720-201ENST00000517166 92 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms