Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SNORD45.3-201ENST00000363836 72 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.432-201ENST00000384087 111 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.441-201ENST00000384123 112 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-163P-201ENST00000384396 106 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 MIR15B-201ENST00000385045 98 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 MIR660-201ENST00000385235 97 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 SNORA26-201ENST00000391286 122 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 HMGN2P32-201ENST00000444648 269 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 AC114811.1-201ENST00000507207 168 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 MIR4431-201ENST00000579990 94 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 AP000942.3-201ENST00000603702 160 ntBASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.95□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.150-201ENST00000363562 102 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 SNORD14E-201ENST00000364009 85 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-203P-201ENST00000384038 104 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 SNORD72-201ENST00000390994 80 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 RN7SKP51-201ENST00000410781 304 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.622-201ENST00000411091 108 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 RN7SL274P-201ENST00000492268 272 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 RNU7-12P-201ENST00000516030 62 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-1116P-201ENST00000517269 99 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 AC097639.2-201ENST00000603159 172 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 AC103810.8-201ENST00000607347 118 ntBASIC1.94□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-442P-201ENST00000383968 104 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.486-201ENST00000384398 107 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 SNORA17.3-201ENST00000391159 129 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 MIR891A-201ENST00000401237 79 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 AC004965.1-201ENST00000413033 213 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 SNRPGP14-201ENST00000435400 219 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-197P-201ENST00000516680 100 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 AL096840.1-201ENST00000603287 93 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 AC006441.5-201ENST00000612680 209 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 AL442644.1-201ENST00000454390 3105 ntBASIC1.93□□□□□ -2.1
PCDHA1Q9Y5I3 SNORD48-201ENST00000364953 64 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-439P-201ENST00000384188 106 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 SNORA79-201ENST00000408376 140 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 AC108667.1-201ENST00000428618 249 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 SNORA77B-201ENST00000578179 125 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 MIR8074-201ENST00000615081 81 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 SNORD3E-202ENST00000627253 216 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 AC095038.3-201ENST00000634439 195 ntBASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-457P-201ENST00000363999 107 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.634-201ENST00000364811 113 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-643P-201ENST00000384018 107 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 Y_RNA.464-201ENST00000384282 110 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 MIR676-201ENST00000390702 67 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 AC074198.2-201ENST00000508153 258 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-365P-201ENST00000517113 106 ntBASIC1.91□□□□□ -2.1
PCDHA1Q9Y5I3 RNU6-268P-201ENST00000364174 107 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 RNU4-84P-201ENST00000364200 139 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.357-201ENST00000365487 109 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-209P-201ENST00000384118 107 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 MIR802-201ENST00000390235 94 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 MIR1267-201ENST00000408723 78 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 RNU2-70P-201ENST00000410718 179 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-1135P-201ENST00000411083 103 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 RNU5E-9P-201ENST00000411164 104 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 SEPT7P4-201ENST00000437076 306 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 AC024614.2-201ENST00000577584 372 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 uc_338.20-201ENST00000621563 178 ntBASIC1.9□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-239P-201ENST00000390990 99 ntBASIC1.89□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-394P-201ENST00000410735 107 ntBASIC1.89□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-504P-201ENST00000516568 104 ntBASIC1.89□□□□□ -2.11
PCDHA1Q9Y5I3 RNU7-121P-201ENST00000516604 62 ntBASIC1.89□□□□□ -2.11
PCDHA1Q9Y5I3 SNORA44.1-201ENST00000517031 108 ntBASIC1.89□□□□□ -2.11
PCDHA1Q9Y5I3 MIR378D2-201ENST00000580636 98 ntBASIC1.89□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.66-201ENST00000362862 102 ntBASIC1.88□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.91-201ENST00000363042 107 ntBASIC1.88□□□□□ -2.11
PCDHA1Q9Y5I3 SNORD24-201ENST00000383884 75 ntBASIC1.88□□□□□ -2.11
PCDHA1Q9Y5I3 SNORA67.5-201ENST00000391036 107 ntBASIC1.88□□□□□ -2.11
PCDHA1Q9Y5I3 AC107027.2-201ENST00000512197 115 ntBASIC1.88□□□□□ -2.11
PCDHA1Q9Y5I3 MIR452-201ENST00000385020 85 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 MIR30A-201ENST00000385092 71 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 AC015922.2-201ENST00000435593 184 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 AC093850.1-201ENST00000454121 251 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-830P-201ENST00000516353 107 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-1212P-201ENST00000517023 104 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 MIR4778-201ENST00000577635 80 ntBASIC1.87□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-199P-201ENST00000362954 107 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-888P-201ENST00000363010 101 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.272-201ENST00000364696 102 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 SNORD38C-201ENST00000384381 69 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.580-201ENST00000391004 95 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 AC006461.1-201ENST00000412637 326 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 SNRPGP13-201ENST00000442212 177 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.666-201ENST00000516187 112 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 AC015688.6-201ENST00000577737 104 ntBASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
PCDHA1Q9Y5I3 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
PCDHA1Q9Y5I3 RNU6-978P-201ENST00000364371 103 ntBASIC1.85□□□□□ -2.11
PCDHA1Q9Y5I3 Y_RNA.337-201ENST00000365312 102 ntBASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 150.1 ms