Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RPL31P63-201ENST00000422565 375 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.54□□□□□ -2
CCDC9Q9Y3X0 MIR4282-201ENST00000583613 67 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 AC132825.6-201ENST00000638861 357 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.54□□□□□ -2
CCDC9Q9Y3X0 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
CCDC9Q9Y3X0 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.53□□□□□ -2
CCDC9Q9Y3X0 RNU6-682P-201ENST00000363843 106 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 RNU4-10P-201ENST00000364383 140 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 SNORD50B-201ENST00000364995 70 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2.53□□□□□ -2
CCDC9Q9Y3X0 AC027119.1-201ENST00000440877 241 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 SNORD11-201ENST00000459124 84 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 AC092991.1-201ENST00000477176 376 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 RNU1-40P-201ENST00000516816 164 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 RNU1-97P-201ENST00000516872 164 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.53□□□□□ -2
CCDC9Q9Y3X0 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.53□□□□□ -2
CCDC9Q9Y3X0 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-1020P-201ENST00000363684 107 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 RNY4P28-201ENST00000365281 93 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.336-201ENST00000365307 109 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.626-201ENST00000411288 95 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 AL606753.1-201ENST00000427435 87 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 NDUFA4P2-201ENST00000489989 244 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-861P-201ENST00000516745 106 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 AC100767.1-201ENST00000528178 123 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 AC072026.1-201ENST00000605023 201 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 AC068700.1-201ENST00000565862 3754 ntBASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CCDC9Q9Y3X0 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.24-201ENST00000362508 103 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 RNA5SP160-201ENST00000364866 120 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.291-201ENST00000364886 113 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 SNORD113-1-201ENST00000365321 69 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 MIR9-3-201ENST00000385084 90 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-493P-201ENST00000391321 108 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 TMSB4XP3-201ENST00000445144 114 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 AC104435.1-201ENST00000483483 166 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 MIR5002-201ENST00000584713 97 ntBASIC2.51□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.292-201ENST00000364904 97 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.304-201ENST00000365011 112 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 SNORA2.2-201ENST00000365473 135 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-442P-201ENST00000383968 104 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 RN7SKP101-201ENST00000411376 320 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 RNU7-95P-201ENST00000459222 64 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-250P-201ENST00000516958 103 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 uc_338.20-201ENST00000621563 178 ntBASIC2.5□□□□□ -2.01
CCDC9Q9Y3X0 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AL451046.2-201ENST00000403074 277 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AC074198.2-201ENST00000508153 258 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 SNORD116-28-201ENST00000516123 91 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AC090049.2-201ENST00000550377 109 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AC008507.4-201ENST00000585464 127 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AL049861.1-201ENST00000603130 150 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AL513534.2-201ENST00000603836 250 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AL512598.1-201ENST00000610158 273 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 AL121890.5-201ENST00000620848 304 ntBASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
CCDC9Q9Y3X0 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.170-201ENST00000363746 110 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.262-201ENST00000364641 102 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.327-201ENST00000365201 102 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-47P-201ENST00000383866 107 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 RNY1P5-201ENST00000383890 115 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 MIR626-201ENST00000385032 94 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 SNORA67.5-201ENST00000391036 107 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 Y_RNA.662-201ENST00000516028 97 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-902P-201ENST00000517212 91 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 MIR548AI-201ENST00000579940 88 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 uc_338.4-201ENST00000616635 176 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 AL365265.1-201ENST00000621045 234 ntBASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.48□□□□□ -2.01
CCDC9Q9Y3X0 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 MIR1276-201ENST00000408707 83 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 RNU6-922P-201ENST00000516753 99 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 AC022559.1-201ENST00000520905 205 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 FAM106DP-201ENST00000586416 501 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 AC011921.3-201ENST00000605540 361 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 AL021707.8-201ENST00000609428 183 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 AC021753.1-201ENST00000635724 168 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 U6.106-201ENST00000636360 105 ntBASIC2.47□□□□□ -2.01
CCDC9Q9Y3X0 MIR613-201ENST00000385248 95 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 MIR653-201ENST00000385279 96 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 RNU6ATAC2P-201ENST00000387943 126 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 RPL30P7-201ENST00000479312 323 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-917P-201ENST00000516294 104 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 MIR6504-201ENST00000613520 61 ntBASIC2.46□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.233-201ENST00000364407 101 ntBASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.240-201ENST00000364469 95 ntBASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 SNORD38C-201ENST00000384381 69 ntBASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 RPS27P16-201ENST00000425758 201 ntBASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 RPS29P11-201ENST00000496507 171 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms