Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 MIR4662B-201ENST00000579498 81 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 AC103810.8-201ENST00000607347 118 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 MIR8070-201ENST00000616510 88 ntBASIC1.81□□□□□ -2.12
VPS4AQ9UN37 SNORD68-201ENST00000363214 84 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 RNU6-833P-201ENST00000363486 107 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.150-201ENST00000363562 102 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 SNORD72-201ENST00000390994 80 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 BTF3P4-201ENST00000418852 495 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 CALM2P4-201ENST00000430810 426 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.8□□□□□ -2.12
VPS4AQ9UN37 AC023449.1-201ENST00000454464 154 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 CYCTP-201ENST00000504253 315 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.662-201ENST00000516028 97 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 RNA5SP153-201ENST00000516498 76 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 RNU7-149P-201ENST00000516739 59 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 MIR4431-201ENST00000579990 94 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.8□□□□□ -2.12
VPS4AQ9UN37 SNORD45.3-201ENST00000363836 72 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.242-201ENST00000364473 110 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 RNU6-728P-201ENST00000365375 104 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
VPS4AQ9UN37 RNU5E-9P-201ENST00000411164 104 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS4AQ9UN37 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.79□□□□□ -2.12
VPS4AQ9UN37 AC074198.2-201ENST00000508153 258 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 SNORD45.4-201ENST00000516629 73 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 RNU6-126P-201ENST00000516685 103 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 RNU6-1212P-201ENST00000517023 104 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS4AQ9UN37 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.79□□□□□ -2.12
VPS4AQ9UN37 AC120024.3-201ENST00000603167 156 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 AL359821.1-201ENST00000605519 182 ntBASIC1.79□□□□□ -2.12
VPS4AQ9UN37 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VPS4AQ9UN37 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
VPS4AQ9UN37 MIR424-201ENST00000362227 98 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 RNU6-457P-201ENST00000363999 107 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.336-201ENST00000365307 109 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 RNU6-203P-201ENST00000384038 104 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.464-201ENST00000384282 110 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 Y_RNA.486-201ENST00000384398 107 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 MIR660-201ENST00000385235 97 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 RNU6-394P-201ENST00000410735 107 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 AC003989.2-201ENST00000440224 169 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 PGBD4P5-201ENST00000445958 426 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 RNU7-34P-201ENST00000459394 64 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 RNA5SP57-201ENST00000459463 123 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 SNORA77B-201ENST00000578179 125 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 AC006441.5-201ENST00000612680 209 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 Pinc.1-201ENST00000616452 154 ntBASIC1.78□□□□□ -2.12
VPS4AQ9UN37 RNU6-1123P-201ENST00000362347 106 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 SNORA16.1-201ENST00000364597 132 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.270-201ENST00000364693 104 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 snoU2-30.1-201ENST00000365012 70 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 MIR15B-201ENST00000385045 98 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 SNORA17.3-201ENST00000391159 129 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 RNU6-1135P-201ENST00000411083 103 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 MLLT10P1-201ENST00000418346 262 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 JTBP1-201ENST00000441314 247 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 SNORD13-201ENST00000459299 104 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 AC114811.1-201ENST00000507207 168 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 RNU6-1299P-201ENST00000516316 100 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 RNU7-121P-201ENST00000516604 62 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 RNU6-197P-201ENST00000516680 100 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 RNU6-1116P-201ENST00000517269 99 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 AC095038.3-201ENST00000634439 195 ntBASIC1.77□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.66-201ENST00000362862 102 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.116-201ENST00000363292 103 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 RNU4-84P-201ENST00000364200 139 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.634-201ENST00000364811 113 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.432-201ENST00000384087 111 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.622-201ENST00000411091 108 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.76□□□□□ -2.13
VPS4AQ9UN37 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS4AQ9UN37 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VPS4AQ9UN37 RNU6-643P-201ENST00000384018 107 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 RNU6-209P-201ENST00000384118 107 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 RNU6-439P-201ENST00000384188 106 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 AC004965.1-201ENST00000413033 213 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 SEPT7P4-201ENST00000437076 306 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 HMGN2P32-201ENST00000444648 269 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 AL121914.1-201ENST00000450188 156 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 snoU13.18-201ENST00000459483 104 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 MIR3683-201ENST00000580847 82 ntBASIC1.75□□□□□ -2.13
VPS4AQ9UN37 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
VPS4AQ9UN37 RNU6-1084P-201ENST00000362498 107 ntBASIC1.74□□□□□ -2.13
VPS4AQ9UN37 RNU6-442P-201ENST00000383968 104 ntBASIC1.74□□□□□ -2.13
VPS4AQ9UN37 SNORA26-201ENST00000391286 122 ntBASIC1.74□□□□□ -2.13
VPS4AQ9UN37 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.74□□□□□ -2.13
VPS4AQ9UN37 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS4AQ9UN37 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.91-201ENST00000363042 107 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 RNU6-268P-201ENST00000364174 107 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 RNU6-978P-201ENST00000364371 103 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 SNORD24-201ENST00000383884 75 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 RNU6-163P-201ENST00000384396 106 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 Y_RNA.580-201ENST00000391004 95 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 MIR891A-201ENST00000401237 79 ntBASIC1.73□□□□□ -2.13
VPS4AQ9UN37 RNU7-12P-201ENST00000516030 62 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 183 ms